LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g02751	ATGGATCACAGCCCTCATCGTCCCTCTCGTGAATTGACCTTCTTCAGCTCCGACGACTTTCTCCCCCATAATTCAGATCCAACAGCCGGCCGCCAGCATCCTCCCCTCAAGGAAATGGATTTCTTCTCCCGCTCAGTTGACAAAAACTGTGATTCTAGCCCGCCTCATCATCAGGATCCAGATCATGACGACGACCGCCAAGACGGAAATGGATCGGTTCCTCCCACTGATCGGCCTGTAAACACCGGCCTAAATCTAACGCGTGTAGGTCCTGGAACGTCAGTGGAGGCTCATGAAAATCCTAACACCGAGCTCATGAGCACAATCCGAGGTGAATTAAGGAGGCTGCATGTAGAGAACAGGAAGTTGAGAACTATGCTCGACCAGATCACCAAAAGCTATAGCCAACTACAAGCCCAGCAGTTTATCGCTCTGCAAAATAAAAACCCTATGAAGGTTGAAGCAAATGGAATAGGGTTGGGTAAACAGTCGAGGGACCCACAGCCATCTGCCAATGATGCATCGATCTCCGATGATAAGACTCAGTCAGTTTCGGCGCCCTCAAACAATGCGGAGGTAATGTCAAACCTGCGCGAACATCATTTGACTAAGCTTCTTGGGAAGCGAGCTTGTCCTGAAGATGGTTTTGACCGCTCCTCTCAGAGTTGGGAGTCATGCAAGAGCACAAGGTTACAAGAATCCAAGAGATCAGACGAACAAGTTTCGGATCAGGCCCCCTTCAGGAAAGCCAGGGTTTCCGTACGCGCAAGATCAGAAGCTCCTCTGATAAGCGATGGATGTCAATGGAGAAAATATGGACAGAAAATGGCAAAGGGCAATCCCTGCCCTCGTGCTTATTATCGTTGCACTATGGCCGTAGGATGCCCAGTTCGTAAGCAGGTGCAACGGTGTGCGGAGGACAAGACAGTGCTGATAACTACCTACGAAGGAAATCACAACCACCCTCTCCCTCCGGCGGCCACCGCCATGGCTAATACAACATCGGCGGCGGCCGCAATGCTCCTTTCCGGTTCAACATCAAGTACGAGCAAGGAAGGCTTAACACATTGCGCGGGATACATGGGTTCGATGGCCTACCCGTACGCGTCATTGGCCACATTATCAGCGTCTGCACCATTTCCAACTATCACCTTGGACTTGACCCAAGTCCCAAACGGCATGCAGCTGCAACGAGCACATCCCTCATCATCAATGCCAGTAATGTTTCATGGGATCCCTCAGGGACAGCTAACAGGACATCCCATGATGTTCCCACAGAACTTGCTTCAACTAGGGCAAAGGCTGCCTTCCAATTCTTCGGCTATGGTTGAGACGGTGAGTGCAGCCATTGCTTCTGATCCCAATTTGACTGCAGCATTGGCTGCTGCAATCTCATCCATCATAGGGGCATCGGGCGGTGGCGGCGGAGCAGCAGGTAATAATACGGTTACGGCACCTACCGGAGCTGCTATAAATATTCCAAATAGTGCCTTTAACCCCAATCTTCCTGTGCTCCCTCTCTCCCCGCAACTTCCTCGTTCTCGCACTACGCTGTCCACCAACTAG	1566	0.5134	MDHSPHRPSRELTFFSSDDFLPHNSDPTAGRQHPPLKEMDFFSRSVDKNCDSSPPHHQDPDHDDDRQDGNGSVPPTDRPVNTGLNLTRVGPGTSVEAHENPNTELMSTIRGELRRLHVENRKLRTMLDQITKSYSQLQAQQFIALQNKNPMKVEANGIGLGKQSRDPQPSANDASISDDKTQSVSAPSNNAEVMSNLREHHLTKLLGKRACPEDGFDRSSQSWESCKSTRLQESKRSDEQVSDQAPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSTSSTSKEGLTHCAGYMGSMAYPYASLATLSASAPFPTITLDLTQVPNGMQLQRAHPSSSMPVMFHGIPQGQLTGHPMMFPQNLLQLGQRLPSNSSAMVETVSAAIASDPNLTAALAAAISSIIGASGGGGGAAGNNTVTAPTGAAINIPNSAFNPNLPVLPLSPQLPRSRTTLSTN	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g02751	521	MobiDBLite	consensus disorder prediction	213	246	-	-
	Accr5g02751	521	ProSiteProfiles	WRKY domain profile.	258	324	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g02751	521	Coils	Coil	120	140	-	-
	Accr5g02751	521	MobiDBLite	consensus disorder prediction	1	108	-	-
	Accr5g02751	521	Pfam	WRKY DNA -binding domain	265	322	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g02751	521	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	99	476	IPR044810	GO:0003700
	Accr5g02751	521	FunFam	probable WRKY transcription factor 31	248	325	-	-
	Accr5g02751	521	SMART	WRKY_cls	263	323	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g02751	521	MobiDBLite	consensus disorder prediction	229	246	-	-
	Accr5g02751	521	MobiDBLite	consensus disorder prediction	37	71	-	-
	Accr5g02751	521	MobiDBLite	consensus disorder prediction	74	89	-	-
	Accr5g02751	521	SUPERFAMILY	WRKY DNA-binding domain	256	324	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g02751	521	MobiDBLite	consensus disorder prediction	157	189	-	-
	Accr5g02751	521	Gene3D	WRKY domain	248	325	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g02751	521	MobiDBLite	consensus disorder prediction	163	189	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g02751	Accr-Chr5	53427736	53430189	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g02751	89	468	WRKY Transcription Factor Family	AT4G04450	43.095	5.79e-82	260

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Accr5g02751		WRKY	5.4e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr5g02751	-		-	tcc:18613814	411.764