Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02718 ATGCTGGAGAATCTTAATAACCACTCGGATCAAAGAGTCACCGGAAACGGCCTCCCTCCTCCCCCTCCCCCTCCCCCTCCCAGTCACCCAATACACCCTCATATCCATGAGCCGTTTTTCAACCACTGCAACTTTCAACCGCCGGCAGGTAACTTCACTTACCCCCATGTCCCTGGCCCTCCCAATGGTTTTGCTAACCATAATCAACCTTATAACCACTTCAATCACGTGAATGGCGAATCGAACAACTCGTTCGGTGCTGGAGCACCTCCCTCTACTAATGGGAACTCTGGATATGGTTTTAACCATTCCTTGCCTCGTCCGGGGCGGAAACGAGGTTGGCATCTCGCTACCCAAGGAACTCCTCCAGATCAAGTTGACGGTGCTTGTAATGTGAAACTCTACATTGCTCCAGTTCCACGAACATCTACAGAAAATGATATCCGCCTTGTGTTTGAACAACATGGAACTATAGTTGAAGTTGTTCTTTTGTGGGATAAGAAGACAGGCGAAAGACAAGGAAGTTGTTTTGTGAAATTTGCAACGTTAGATGAAGCTGAGAGGGCCATCAAAGCTTTAAGCAATCGATATACTTTTCCTGGGGAGTCATTGCCTATTGTTGTCAGATTTGCTGACCGAGGAAAAGGGCGTCTTGGGACTCGAGGGTTCTCCCAAATTATGGATAAAAAAAGTCACTCAGAAGAGGTGGTGGACAAAGTGTTTGTTGGTCACATCAACAAAGAAGCTTCAAAAAAGGAAATTGAAGAAGTATTTTCTCCTTATGGACATATAGAGGACATCTTCATTGCACAATCTCGCGGATATGGTTTTGTCAAATTTTCAAACAAAGACATGGCTTTGGCAGCAATCAAAGGGCTGAACAATGCATTCACAATGAGGGGTTGTGAGCATCCATTAATTGTTCGTTTTGCGGAACCTAAGAAACCCAAAACTGGAGAACCCAGGGCCAACCATATGCCTGGGAGTGCATTTGGTCCATGCTCTCAAGAACCAGCAGTCTGGCTGCCACCAAACTTCGGTGATTCCATTGGAGGGAGTAATATGCCTATGGCCCCGCATCATCCCACAATTCCACACCCACAAGTTGCTCCTCATATTCAAAACTGGGAACCTGCTAATGCTATGGTGCAGCAACCATTTCCTTCCAAGCCAGCACATCCACAGTCGGTTCCAGTGCTCTCCCAGTCCATGCAGGCTCAAAAGTTATCTTCTCAACCAGTTGTCACCGAGGTGCTGAAGCAGTCACATCCAACAGATTCATCAACTCAAAATATAGAGCAGCAGCTAAATTCACAGCCTTCCCAAGCCGGAGGCAGTCCTTTTGCTGTTGCGGGCAGGAAATCACCAGATATGCCAGAAAGTTCTGATGAGGAAGTTTATCCAGATTGTGACTGGAGTGAACATATCTGTCCTGATGGCAATAAGTACTACTATAACTGCGTGACTTATGAAAGTAGGTGGGAGAAGCCTGAGGAATATGCCTTGTATGAGAAGAAACAAGAGCAGGAGGATCATGGCTGTCCAAATTCATAG 1554 0.4633 MLENLNNHSDQRVTGNGLPPPPPPPPPSHPIHPHIHEPFFNHCNFQPPAGNFTYPHVPGPPNGFANHNQPYNHFNHVNGESNNSFGAGAPPSTNGNSGYGFNHSLPRPGRKRGWHLATQGTPPDQVDGACNVKLYIAPVPRTSTENDIRLVFEQHGTIVEVVLLWDKKTGERQGSCFVKFATLDEAERAIKALSNRYTFPGESLPIVVRFADRGKGRLGTRGFSQIMDKKSHSEEVVDKVFVGHINKEASKKEIEEVFSPYGHIEDIFIAQSRGYGFVKFSNKDMALAAIKGLNNAFTMRGCEHPLIVRFAEPKKPKTGEPRANHMPGSAFGPCSQEPAVWLPPNFGDSIGGSNMPMAPHHPTIPHPQVAPHIQNWEPANAMVQQPFPSKPAHPQSVPVLSQSMQAQKLSSQPVVTEVLKQSHPTDSSTQNIEQQLNSQPSQAGGSPFAVAGRKSPDMPESSDEEVYPDCDWSEHICPDGNKYYYNCVTYESRWEKPEEYALYEKKQEQEDHGCPNS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02718 517 SMART rrm1_1 133 209 IPR000504 GO:0003723
Accr5g02718 517 SMART rrm1_1 239 309 IPR000504 GO:0003723
Accr5g02718 517 ProSiteProfiles WW/rsp5/WWP domain profile. 472 499 IPR001202 GO:0005515
Accr5g02718 517 Gene3D - 125 218 IPR012677 -
Accr5g02718 517 Gene3D - 225 319 IPR012677 -
Accr5g02718 517 MobiDBLite consensus disorder prediction 65 101 - -
Accr5g02718 517 SUPERFAMILY WW domain 471 503 IPR036020 GO:0005515
Accr5g02718 517 PANTHER RNA BINDING PROTEIN 34 440 - -
Accr5g02718 517 MobiDBLite consensus disorder prediction 395 445 - -
Accr5g02718 517 Pfam WW domain 471 497 IPR001202 GO:0005515
Accr5g02718 517 MobiDBLite consensus disorder prediction 1 39 - -
Accr5g02718 517 MobiDBLite consensus disorder prediction 384 467 - -
Accr5g02718 517 SUPERFAMILY RNA-binding domain, RBD 233 321 IPR035979 GO:0003676
Accr5g02718 517 SUPERFAMILY RNA-binding domain, RBD 118 221 IPR035979 GO:0003676
Accr5g02718 517 MobiDBLite consensus disorder prediction 16 33 - -
Accr5g02718 517 Gene3D - 468 512 - -
Accr5g02718 517 SMART ww_5 467 499 IPR001202 GO:0005515
Accr5g02718 517 ProSitePatterns WW/rsp5/WWP domain signature. 472 497 IPR001202 GO:0005515
Accr5g02718 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 313 IPR000504 GO:0003723
Accr5g02718 517 MobiDBLite consensus disorder prediction 64 110 - -
Accr5g02718 517 CDD WW 470 499 IPR001202 GO:0005515
Accr5g02718 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 213 IPR000504 GO:0003723
Accr5g02718 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Accr5g02718 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 301 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02718 Accr-Chr5 53129839 53137826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02718 134 340 Eukaryotic Initiation Factors Gene Family AT1G49760 25.229 1.16e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02718 K13207 - gmx:100795107 573.548