Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02689 ATGGGAGAGGTTGTCATGTTTATTGACGATTTGAAATCAATTTCTGGGATTTCTCGATGCAGAATTTGTCATGAAGAAGAATTTGAGAGCTCAAAAAGCTTTGAAGCTCCCTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAATGAGAAAGGGAACACAATTTGTGAAATATGTCTCCAGCAATATGAACCTGGTTACACGGCTCCACCTCCAAAGAAATTGCAGATAAATGATGAAGCAATGACCATTCGAGATAGCCTGCAAATTTCAAGAATGGAAGAAGAAGCGCTGAATGCAAGGTTAGAAGCAATAGTTGAAAGAGTGGCAATAGAAAGTGATTACTCTGAATGCACGTCTGCCGCAGATAGAAGTGCATCTTACTGCCGATTCCTGGCCTTGGCCTTTACACTCTTCATGCTTGTGAGACATCTTTTCGCTGTGCTTACGAGTGGAACAGAAGATTACCCATTTACACTTCTTACTGTTTTAATGCTAAGGGCTGGCGGAATTGTGCTGCCCATGTTCATTATTATTAGAATGATTGGAGCGATCCAAAACATAATTCAGCGCCACTATCAGGATTCTGAGGATGGCGCGGCCATATCTGATGGATACGACAACGAAAACGGGACACTGCGTGATTTGATTTTTAGACACGAATAG 690 0.4232 MGEVVMFIDDLKSISGISRCRICHEEEFESSKSFEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQQYEPGYTAPPPKKLQINDEAMTIRDSLQISRMEEEALNARLEAIVERVAIESDYSECTSAADRSASYCRFLALAFTLFMLVRHLFAVLTSGTEDYPFTLLTVLMLRAGGIVLPMFIIIRMIGAIQNIIQRHYQDSEDGAAISDGYDNENGTLRDLIFRHE 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02689 229 Pfam Protein of unknown function (DUF3675) 73 190 IPR022143 -
Accr5g02689 229 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Accr5g02689 229 CDD RING_CH-C4HC3_MARCH 20 67 - -
Accr5g02689 229 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Accr5g02689 229 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 200 IPR033275 -
Accr5g02689 229 SMART ringv_2 19 68 IPR011016 GO:0008270
Accr5g02689 229 SUPERFAMILY RING/U-box 19 72 - -
Accr5g02689 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Accr5g02689 229 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02689 Accr-Chr5 52913140 52915144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02689 20 67 C3H Transcription Factor Family AT5G05830 40.385 1.74e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02689 - - gmx:100797029 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g03279 2 68425363 68427781 Accr5g02689 5 52913140 52915144 CCT
Accr5g02689 5 52913140 52915144 Accr5g02689 5 52913140 52915144 ECH