Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02683 ATGTTGGAGACAAGTATTCCATCTCAAGTGTTTCTCAACATTCGTTTCGTTCTCTATGGTTTTGATCCTATCAACGAAAGCAAGGTTCGATTCAAGCTTGTAAATGGCGGTGGAGTTGATGTTGGTCAGTGCGTTCCAAGTTGCACACATGTCGTTGTAGGCAAACTTACTTATGATGATCCTATTTGCCTTGCTGCAAGAAATGATGGGAAGACGCTTGTCACTGCTTTGTGGGTTGATCACAGCGTTGACATTGGAATGGCAGTTGATGCGACCTCCGTCATGTATAGGCCCCTGAAAGATTTAAATGGTATACCGGGTGCCAAGAATTTGGTTGTTTGCTTGACTGGTTATCAACGTCAAGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCTGAATTTTCTAAGCCATTGGTGGCAAGCAAAGTTACTCATCTTATATGCTACAAATTTGAAGGAGAAAAGTATGAGCTTGCCAGTAGACTGCAGACAATTAAGTTAGTTAATCATCGGTGGTTAGAAGACTGTTTGAAGGATTGGTTGCTTCTCCCTGAAGAAAAATATAAGAAGAGTGGTTATGAACTAGAGACGATGGCAGAAGAGGCTAAAGACTCTGAAGAAGAAGCTGAAGATCTAGTATCTGGGAAGTCTGGGGGAAGAGGCATCACTAAGAGTCCCTTTAGTTCAAAAATGAATACTACTACAACCCATAACTCATCAAAACCTGTAGTAGTAGAATCAAATGCCTTTCCGGGTTCTGCTGCTCCAGAGGGATCGCGGAAAGCAAATGAGCGGCATGAGTCTATGTCAATTATCAAAATTGAGAAAACATCTGATCAGACCAGAAACGCCCATCATGATGTTTTAGAATCAAGTTCTGGGGATCCTGGCGTTTCCAGGCGTGATGCATCTGGTCAGCTACCCGACACATGTGCCAAGACCACTAAACCTAAAAACACTTGTGTTCAGGATGCTGTTGACTGCCAGAATCTTGGAATTCCTGGAAATGCTGATTCATCAGGTCATGCTCCTGATCTTCAGGTTAGTACTTCTGAGTATGGGAAGTTGGTTAATGACTTGAGATTGACTTCTGATAGTGTTGAAGGACATCTACGCTCAGATGCAAGGGGTAGTGCTGCAACTAGCCCTAGGAAAACCTTAAAGAGATTTTCTCCTCCAAGTGGCTTAAATGAAAACCTTGGCAATTTAAGTGAGCCTTCTGCATCACCTTTAAATAATTTAAAATTAAGAAATGACCTAGAAGCCTCTTCGAACAAGGTGGAAAAGGCAAGTGACAGTATCAACTTCGACTTTGTTGAAGGTTCTGGGAAAGGTAACCGTTTTAGTAACAAGAAAAACAAGAAAGGGCCAAGTAGTTTGTTAGCCAAAAAGAGGTCGATTGAAGCTTCTACTAAATTAAATTCTATGATGACGAAAGACACAAAACTTTCCATTGAAAGATCCCCATTAGCAGATGGCAATAAACTTCCAGAGATAGAACACCATTTTCCTGTGGGCAGAGATGATATGAAGGACAAAGAATCTGTAAGCTCAGAGTCTCTGCAACACGATGCACTCAAAATAAATGGCGAGCCTGATATTGCAGATCGTGGCTGGGAAGAAGTTGCTCAAGATGGCAATGAAACAGAACCTCATAATACCAGGAACGATCTTGAATGCTCATATTCGAGTAAAAAGAAGTCTAGAAATGAGGAATCAACTGGTCATGCAAGCCTGGATTTATGCAACAAAGTAAGTGATAAGTTGATTAGAAAATCGCCCCGCAAGAAGACAGTTGCCAAGAAATGTTTGGGTTCCAGACCTAAATCAGGTGCTACTGCTAAAAAGAAGAGTTTGATTTCATTAGATGAAAATACCCTTAAAGCTGATGGCGCAGGTTGTTTAAGTGGCCGGAAAGAGACGGCACTTTGTGATGGCAAGAAACTTGTTAAATCCTCAAAAATTGTTAGTGTTGAAATATCAGCGGAGCAGGAGAGCGTTTGCAAATCTGCAGAAAATACCAATGGCAGAGAATTTCAGGATGAAGAAACAGAGGCTCCGGATGAAAAAATTGAGTACGAGGGACTGACAGTTGTTGAAGACAATCGTGAATCAGTTAATATTTTGAAAAAATATGTTACGCAGACAGAAGAGAAATTCAAAGCAACTCACCATGCATCAAAATCTAAATCAAAGCCTCCAAAGGAAGATACAAATGGAACTAAACCGGTGGAACTTGAGCTGGTAGACTCAACCTCTAAAGGAAAAGGAAAGCCTAAAGGCAGAAAACTTACTGAAGGTAGAACCAAGAAAGCCCCATTTACCAAGGATAAAATGAGGCCTGAGGAGGCTGCGTCCAATGAGAGGAAAGATGAGACAGATATGGAAACCATGGAAACAGCTTTATTTCCTGCTGGTAAAGATAGCGGCTCAGCAGTACAGACAAATAGTGCAGGGAGTTTTCAGGAAGTTGAGAAGGAAAACAGGCCAATTGATGGAGAGGGTATAAACATTGGAAACTCGGTAATTAAAACTAGTGCAGGTCAAGCAAAGGTCAATCAAAAGACTTGGAAAAAAGCTCTTATTTCATCTACATCAGAAGATAACAGAAGAGTGAAGAAAGAAGCTGCATGTTTTCTAGTAAGTGGGCACCGCTTACAGAGAAAGGAGTTTCAACAATTGATTAGGCGATTGAAAGGAAGGGTCTGCCGGGATACTCATCAGTGGTCGTATCAGGCAACACACTTCATAGCCCCAGATCCTGTACGCAGGACTGAGAAATTTTTCGCTGCTGCTGCATCAGGGAGGTGGATTCTTAAAACTGATTACTTAACTGCCTGTAGTGAGGCCGGTAAATTCTTGACCGAAGAACCTTATGAGTGGCATAAGAGTGGCCTTAGCGAGGATGGTGCAATCAATTTGGAGGCTCCAAGAAGATGGCGGCTTTTGAGAGAGAAGACAGGTCATGGCGTCTTATATGGAGTGCGCATTATTGTATACGGCGATTGCATTGTCCCACCTTTGGATACATTGAAGCGTGTAGTCAAAGCAGGAGATGGAACTATATTAGCAACCTCTCCTCCTTACACCCGGTTCCTTGATGCCGGTATTGACTTTGCCATAGTTAGCCCGGGAATGCCACGTGTGGACATGTGGGTCCAAGAATTCTTAAAACATGAGATTCCCTGCGTTTTAGCTGACTACTTGGTGGAGTATGTGTGCAAGCCCGGGTTCTCCCTGGAGAAACATGTACTGTATGGGACTCATGCCTGGGCAGAGAGGTCATTTGCTAACCTTCAAAGGAAGGCAGAAGAGATCATCGAGGATCCTCCAGAAATTGATGATAATGACGCAGCTTGCCAAGTATGTGGATCTCGAGATAGAGGAGACGTAATGCTGATATGTGGTGATGAAAGTGGTTCCGTTGGTTGTGGAGTTGGTATCCATATCGATTGCTGCGATCCTCCTCTGAAAGATGTTCCTGAGGAGGATTGGTTTTGTCCCAAGTGCACTGAAACCCGAAACTGCTCTAGCTCTAACAAGAAAAGGAAAAAAGGCGTCTTGTCTTCCTCGAAGATCAAGTGA 3594 0.4279 MLETSIPSQVFLNIRFVLYGFDPINESKVRFKLVNGGGVDVGQCVPSCTHVVVGKLTYDDPICLAARNDGKTLVTALWVDHSVDIGMAVDATSVMYRPLKDLNGIPGAKNLVVCLTGYQRQDRDDIMTMVGLMGAEFSKPLVASKVTHLICYKFEGEKYELASRLQTIKLVNHRWLEDCLKDWLLLPEEKYKKSGYELETMAEEAKDSEEEAEDLVSGKSGGRGITKSPFSSKMNTTTTHNSSKPVVVESNAFPGSAAPEGSRKANERHESMSIIKIEKTSDQTRNAHHDVLESSSGDPGVSRRDASGQLPDTCAKTTKPKNTCVQDAVDCQNLGIPGNADSSGHAPDLQVSTSEYGKLVNDLRLTSDSVEGHLRSDARGSAATSPRKTLKRFSPPSGLNENLGNLSEPSASPLNNLKLRNDLEASSNKVEKASDSINFDFVEGSGKGNRFSNKKNKKGPSSLLAKKRSIEASTKLNSMMTKDTKLSIERSPLADGNKLPEIEHHFPVGRDDMKDKESVSSESLQHDALKINGEPDIADRGWEEVAQDGNETEPHNTRNDLECSYSSKKKSRNEESTGHASLDLCNKVSDKLIRKSPRKKTVAKKCLGSRPKSGATAKKKSLISLDENTLKADGAGCLSGRKETALCDGKKLVKSSKIVSVEISAEQESVCKSAENTNGREFQDEETEAPDEKIEYEGLTVVEDNRESVNILKKYVTQTEEKFKATHHASKSKSKPPKEDTNGTKPVELELVDSTSKGKGKPKGRKLTEGRTKKAPFTKDKMRPEEAASNERKDETDMETMETALFPAGKDSGSAVQTNSAGSFQEVEKENRPIDGEGINIGNSVIKTSAGQAKVNQKTWKKALISSTSEDNRRVKKEAACFLVSGHRLQRKEFQQLIRRLKGRVCRDTHQWSYQATHFIAPDPVRRTEKFFAAAASGRWILKTDYLTACSEAGKFLTEEPYEWHKSGLSEDGAINLEAPRRWRLLREKTGHGVLYGVRIIVYGDCIVPPLDTLKRVVKAGDGTILATSPPYTRFLDAGIDFAIVSPGMPRVDMWVQEFLKHEIPCVLADYLVEYVCKPGFSLEKHVLYGTHAWAERSFANLQRKAEEIIEDPPEIDDNDAACQVCGSRDRGDVMLICGDESGSVGCGVGIHIDCCDPPLKDVPEEDWFCPKCTETRNCSSSNKKRKKGVLSSSKIK 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02683 1197 Pfam BRCA1 C Terminus (BRCT) domain 884 950 IPR001357 -
Accr5g02683 1197 Gene3D BRCT domain 992 1087 IPR036420 -
Accr5g02683 1197 SMART PHD_3 1122 1174 IPR001965 -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 494 536 - -
Accr5g02683 1197 Gene3D BRCT domain 1 95 IPR036420 -
Accr5g02683 1197 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 756 1188 IPR044254 -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 1176 1197 - -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 549 579 - -
Accr5g02683 1197 Gene3D BRCT domain 99 220 IPR036420 -
Accr5g02683 1197 FunFam DNA topoisomerase 2-binding protein 1 874 992 - -
Accr5g02683 1197 Pfam PHD-finger 1123 1175 IPR019787 -
Accr5g02683 1197 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Accr5g02683 1197 Pfam twin BRCT domain 111 175 IPR001357 -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 387 412 - -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 224 243 - -
Accr5g02683 1197 SUPERFAMILY FYVE/PHD zinc finger 1113 1179 IPR011011 -
Accr5g02683 1197 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 277 292 - -
Accr5g02683 1197 SUPERFAMILY BRCT domain 7 92 IPR036420 -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 678 693 - -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 595 620 - -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 371 412 - -
Accr5g02683 1197 Coils Coil 198 218 - -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 496 523 - -
Accr5g02683 1197 CDD BRCT_TopBP1_rpt7 881 954 - -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 721 798 - -
Accr5g02683 1197 Gene3D BRCT domain 873 990 IPR036420 -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 549 577 - -
Accr5g02683 1197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1088 1189 IPR013083 -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 203 243 - -
Accr5g02683 1197 ProSiteProfiles Zinc finger PHD-type profile. 1120 1176 IPR019787 -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 277 314 - -
Accr5g02683 1197 SMART BRCT_7 873 954 IPR001357 -
Accr5g02683 1197 SMART BRCT_7 8 86 IPR001357 -
Accr5g02683 1197 SMART BRCT_7 992 1079 IPR001357 -
Accr5g02683 1197 SMART BRCT_7 106 183 IPR001357 -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 444 469 - -
Accr5g02683 1197 ProSiteProfiles BRCT domain profile. 882 964 IPR001357 -
Accr5g02683 1197 MobiDBLite consensus disorder prediction 669 693 - -
Accr5g02683 1197 SUPERFAMILY BRCT domain 883 985 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02683 129 214 Core DNA Replication Machinery Family AT4G02110 74.419 3.21e-35 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr5g02683 BRCT 3.3e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02683 K10728 - qsa:O6P43_007236 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02683 5 52855096 52861116 Accr5g02683 5 52855096 52861116 ECH