Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02633 ATGAAGTTCTGCAAGAGATACGAGGAGTACATGCAGGGACAGCAGAAGAAACTTCCTGGAGTTGGGATCAAGAAGCTCAAGAAGATATTGAAAACATGTAGCAGAGACTGCCGATCCCGCAAAGGCCTCAATGAAGCCTTTGGCCTCCGAAAATGCAGCGATCAATGCCCAGTATGTGATGGAAGCTTCTTCCCTTCCCTCCTCAATGGGATGACAGAAGTAGTAGGTTGCTTTAATGAGCGTGCCCAACAGTTGTTGAAGCTACATCTTGCTACTGGCTTCAGAAAGTACTTTTTCTGGTTCAAAGGCAAATTTCCCGGAAAAGAAACTGTCCTCGTTCAAGAAGGCAAAGACCTGGTTATTTATGCTCTAATTAATGCCATTGCAATTCGAAAGATACTCAAGAAATATGATAAGATTCATTATTCAAGGCAGGGACAATTATTTAAGTCGCAAGCCCAGAGTAAGCACATGGAAATTCTCCAGAGTCCCTGGCTTTGTGAGCTCATGGCCTTCCACATCAATTTAAGGGAAGGCAAGAACAAATCAATGAAGAAGCCATCTGCTTTCTTTGATGGATGTTCCCTCACATTTAAGGATGATAAACCATCTCTTACTTGTGAGCCATTTGATTCCATTAAACTTGATATTGACTTGACTTGCTCTATATGCTTGGAAACAGTATTTGATCCAGTTTCTCTTACTTGTGGTCACATATTCTGCTACATGTGTGCTTGCTCATCGGCATCAGTAACTATTGTTGACGGACTTAAGGCAGCAAATTCAAAAGCAAAATGTCCTCTATGCCGAGTGGGAAGAGTCTATCAAGATGCCGTGCGCTTGGAAGAATTAAATATTTTGTTAGGCCGAAGCTGCAAGGGATATTGGGAACAAAGGCTTCAAACGGAGAGAGCTGAGAGAGTTAAGCAAATAAAAGAGCATTGGGATTCGCAGTGCAGGGCATTTGTGGGCGTTTGA 978 0.4264 MKFCKRYEEYMQGQQKKLPGVGIKKLKKILKTCSRDCRSRKGLNEAFGLRKCSDQCPVCDGSFFPSLLNGMTEVVGCFNERAQQLLKLHLATGFRKYFFWFKGKFPGKETVLVQEGKDLVIYALINAIAIRKILKKYDKIHYSRQGQLFKSQAQSKHMEILQSPWLCELMAFHINLREGKNKSMKKPSAFFDGCSLTFKDDKPSLTCEPFDSIKLDIDLTCSICLETVFDPVSLTCGHIFCYMCACSSASVTIVDGLKAANSKAKCPLCRVGRVYQDAVRLEELNILLGRSCKGYWEQRLQTERAERVKQIKEHWDSQCRAFVGV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02633 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 323 IPR013083 -
Accr5g02633 325 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Accr5g02633 325 ProSitePatterns Zinc finger RING-type signature. 236 245 IPR017907 -
Accr5g02633 325 Pfam Zinc finger, C3HC4 type (RING finger) 221 269 IPR018957 GO:0046872
Accr5g02633 325 CDD RING-HC_BAH1-like 211 284 - -
Accr5g02633 325 SMART ring_2 221 269 IPR001841 -
Accr5g02633 325 SUPERFAMILY RING/U-box 214 272 - -
Accr5g02633 325 ProSiteProfiles Zinc finger RING-type profile. 221 270 IPR001841 -
Accr5g02633 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02633 Accr-Chr5 52501509 52504616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02633 218 270 C3H Transcription Factor Family AT4G28270 39.655 7.02e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02633 K16275 - gmx:100797432 523.857