Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02609 ATGAGCCATAACTCAGAGAGAGAAGGCTTCAGCAAGTACAACTTCAACACAAACACAGGATCTCATCACCATCAAGATGGGGGAGTGATCAAAGAGCAAGATCGGTTGCTTCCGATAGCGAATGTCGGGAGGATTATGAAGCAAATTCTGCCTCCTAACGCCAAAATCTCCAAAGAAGCCAAAGAAACAATGCAAGAATGTGTTTCTGAGTTCATAAGCTTCGTGACGGGGGAGGCCTCTGACAAGTGTCACAAGGAGAAGCGCAAGACAGTGAACGGCGACGATATATGCTGGGCCCTCGCCACTCTAGGGTTTGACGACTACGCCGACCCCCTCAAGAGGTATTTGCTTAAGTTTAGGGAATCAGAGGGCGAGAGATCTAACCAAAATAATGCTACCAATATTCATACTGATCATGAACTAAATATTATTGATGATGATCATCAAGCTTATGAATATGGAGGTGAGCCTCCTAGGAGAGCCCCCACTACTGCTACTAGTGCTTCCTCTGCTAGTGGAACCTCATTGATGAGGTTCAATGGCACCTCTCATTCACGCCAGTTTTCAAACTTCTAG 576 0.4601 MSHNSEREGFSKYNFNTNTGSHHHQDGGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYADPLKRYLLKFRESEGERSNQNNATNIHTDHELNIIDDDHQAYEYGGEPPRRAPTTATSASSASGTSLMRFNGTSHSRQFSNF 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02609 191 MobiDBLite consensus disorder prediction 122 141 - -
Accr5g02609 191 FunFam Nuclear transcription factor Y subunit B-3 25 149 - -
Accr5g02609 191 SUPERFAMILY Histone-fold 33 151 IPR009072 GO:0046982
Accr5g02609 191 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 146 IPR027113 GO:0001228|GO:0006355|GO:0016602
Accr5g02609 191 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Accr5g02609 191 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Accr5g02609 191 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Accr5g02609 191 MobiDBLite consensus disorder prediction 150 191 - -
Accr5g02609 191 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Accr5g02609 191 Gene3D Histone, subunit A 24 152 IPR009072 GO:0046982
Accr5g02609 191 MobiDBLite consensus disorder prediction 7 24 - -
Accr5g02609 191 MobiDBLite consensus disorder prediction 1 28 - -
Accr5g02609 191 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634|GO:0006355|GO:0043565
Accr5g02609 191 MobiDBLite consensus disorder prediction 162 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02609 Accr-Chr5 52364008 52364583 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02609 10 128 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.917 4.56e-62 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Accr5g02609 CBFD_NFYB_HMF 1.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02609 K08065 - csav:115707280 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02609 5 52364008 52364583 Accr5g02609 5 52364008 52364583 ECH