Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02608 ATGAGCGATAACTCAGAGAGAGAAGGCTTCAACAAGTACAACTTCAACACCAACACAGGATCTCATCATCATCAAGATGGGGGAGTCATCAAAGAGCAAGATCGGTTGCTTCCGATAGCGAATGTTGGGAGGATTATGAAGCAAATTCTGCCTCCTAACGCCAAAATCTCCAAAGAAGCCAAAGAAATAATGCAGGAATGTGTTTCTGAGTTCATAAGCTTCGTGACGGGGGAGGCCTCTGACAAATGTCACAAGGAGAAGCGCAAGACAGTGAACGGCGACGATATTTGCTGGGCCCTCGCCACTCTAGGGTTTGACGACTACGCCGAGCCCCTCAAGAGGTATTTGCTTAAGTTTAGGGAATCAGAGGGCGAGAGATCTAACCAAAATAATGCTAACAATATTCATACTGATCATGAACTTAATATTATTGGTGATGATAATCATCAAGCTTATGCATATGGAGGTGAGCCTCCAAGGAGAGCCCCCACTACTGCTACTAGTGCTTCCTCTGCTAGTGGAACCTCGTTGATGAGGGTCGTCAATGGCAGCTCTTGTTCACGCCAGTTTTCAAACTTCTAG 582 0.4588 MSDNSEREGFNKYNFNTNTGSHHHQDGGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKEIMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLLKFRESEGERSNQNNANNIHTDHELNIIGDDNHQAYAYGGEPPRRAPTTATSASSASGTSLMRVVNGSSCSRQFSNF 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02608 193 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Accr5g02608 193 MobiDBLite consensus disorder prediction 1 27 - -
Accr5g02608 193 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 146 IPR027113 GO:0001228|GO:0006355|GO:0016602
Accr5g02608 193 MobiDBLite consensus disorder prediction 7 24 - -
Accr5g02608 193 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Accr5g02608 193 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Accr5g02608 193 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Accr5g02608 193 SUPERFAMILY Histone-fold 33 136 IPR009072 GO:0046982
Accr5g02608 193 MobiDBLite consensus disorder prediction 149 174 - -
Accr5g02608 193 FunFam Nuclear transcription factor Y subunit B-3 25 150 - -
Accr5g02608 193 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634|GO:0006355|GO:0043565
Accr5g02608 193 Gene3D Histone, subunit A 24 151 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02608 Accr-Chr5 52348156 52348737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02608 10 130 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.185 4.46e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Accr5g02608 CBFD_NFYB_HMF 2.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02608 K08065 - csav:115707280 219.935