Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02607 ATGTCAAATATTTCAGGTGATGAATTAAGTTTGTCCTCAGGGGAAGAACTCCAATATCAGGAAAACCAGCAGCAGCAACAACACAACCACCTGCATGGCTCAACCTCAACGCCTTCCAACAAAAATGCCTCCAGTGATCATCATCAAAACCGGCTTCAATCCACCAAGAAGAAGCGAAATCTCCCTGGAACTCCAGATCCGAACGCTGAAGTGATTGCTTTGTCCCCGACAACATTGATGGCAACAAACAGATTTGTGTGTGAGGTATGCAACAAAGGGTTTCAGAGGGACCAGAACCTACAGTTACACCGGAGAGGTCACAATCTGCCATGGAAGCTGAGACAGAGAGCGAGCAATGAGGTGCGCCAGAAACGAGTTTACGTGTGTCCAGAGCCTTCATGCGTCCACCATAGCCCAACTCGAGCACTCGGAGACCTCACCGGCATCAAAAAGCACTTTAGCCGCAAACACGGCGAGAAGAAATGGAAATGTGACAAATGCTCAAAAAAATACGCCGTCCAATCTGATTGGAAAGCCCACCAGAAAACCTGCGGTACCCGCGAATACAAATGCGATTGTGGCACCGTATTTTCCAGAAGAGATAGTTTTATCACTCACAGGGCATTTTGTGATGCATTGGCCGAAGAAAACAAGAGGGTGAATTGTGCAGTATCTCTAAACACTTATTCCAACGTATCATCTGAATTAAACACAATGGTTCGTCAAGAGATTCTTCCGGTGCCGTTCAAGTCGACGGGCACGAGCATGTGGGGGGGCATGTTCACCACCACTTCAGGCGCACTTCTCAGTGGTCCAAAAGGCTTGCCTCCTTCTCTTCCCCAGCCTAGCTCCCCCATTTTCAATTCCGTCCAAGATGGCCAGAGAGTTTCGGAGTCAGCTCACGCGTCTGCCACAGCTTTACTGCAGAAAGCAGCTCAAATGGGAGCCACCGTGAGCAATAGTAGCAATAACTCTCACATGGTTCAAAAAGGGTATGTTACTTCCATGGCAGGTCCTGATTACCACCTTGAACCTAACATGGCTGGGATTAGTAATGGAGGTGGAGAATTCAGCAACCTGTTGTTCCAGAAAGGTCCGCAAGAAATGTTGCAATCGTTTGACTCTTACAATGGATCATCTGCTTTGAATGATATGGAAATGTTGAGCCAAATGGTGATGGGAGGAAGAGAAGGAGGAGCAAGTGAGATGACCAGAATTCATGACTTCTTGGGCGTTGGGGGACCCACTCCCTTGCCGCCCAATTTGCAGGGAGATTGGAGTTGGAAGCAATGA 1293 0.4811 MSNISGDELSLSSGEELQYQENQQQQQHNHLHGSTSTPSNKNASSDHHQNRLQSTKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLRQRASNEVRQKRVYVCPEPSCVHHSPTRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEENKRVNCAVSLNTYSNVSSELNTMVRQEILPVPFKSTGTSMWGGMFTTTSGALLSGPKGLPPSLPQPSSPIFNSVQDGQRVSESAHASATALLQKAAQMGATVSNSSNNSHMVQKGYVTSMAGPDYHLEPNMAGISNGGGEFSNLLFQKGPQEMLQSFDSYNGSSALNDMEMLSQMVMGGREGGASEMTRIHDFLGVGGPTPLPPNLQGDWSWKQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02607 430 SMART c2h2final6 162 182 IPR013087 -
Accr5g02607 430 SMART c2h2final6 127 157 IPR013087 -
Accr5g02607 430 SMART c2h2final6 85 107 IPR013087 -
Accr5g02607 430 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Accr5g02607 430 FunFam protein indeterminate-domain 12-like 64 133 - -
Accr5g02607 430 MobiDBLite consensus disorder prediction 1 49 - -
Accr5g02607 430 Gene3D Classic Zinc Finger 140 223 - -
Accr5g02607 430 MobiDBLite consensus disorder prediction 1 70 - -
Accr5g02607 430 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Accr5g02607 430 Gene3D Classic Zinc Finger 62 131 - -
Accr5g02607 430 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Accr5g02607 430 SUPERFAMILY beta-beta-alpha zinc fingers 84 183 IPR036236 -
Accr5g02607 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Accr5g02607 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 412 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02607 Accr-Chr5 52333549 52335306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02607 1 321 IDZ Gene Family AT1G55110 52.991 1.31e-109 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr5g02607 zf-C2H2 0.0064 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02607 - - gmx:100782774 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02193 2 56850168 56851950 Accr5g02607 5 52333549 52335306 CCT
Accr5g02607 5 52333549 52335306 Accr5g02607 5 52333549 52335306 ECH