Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02587 ATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGAGAATTTGGGAGTATTTCTAGGAAAGGATTTGAGGTGAAGTTTGGGTATGGGATGAGATCGCGGTCACAGTCACACCGTGATGCTGGGGATCATGTCATGGTTGGCGATGGTTTGAGGCAGAGTTGTTGGGCTAATATGCCCCCAGAGCTTCTGAGGGATGTGTTAATGAGGATTGAGGCTTCTGAAGATACGTGGCCAGCCCGAAAACATGTGGTTGCTTGTGCTGGTGTCTGCCGCAGTTGGAGAGGAATCATGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTAACGCTCCCAGTCTCCGTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTTCAGTGCTATATTAAACGTCATCGCAGTAATCAAACATATTATCTGTACCTCAGTTTAAACCAAGCTTCAGTCGATGATGGCAAGTTCCTTCTTGCTGCACGGAAATGTCGACGTCCTACCCATACGGACTATATCATTTCTATAAACTGCAAAGACGTATCAAGAGGGAGCAGCACTTACATTGGAAAGTTGAGGTCAAATTTTCTGGGTACCAAATTCACAGTGTATGATGCGCACCCTCCAATTTGTGGTACCAGAGTGACTAAATCTCGTTCAACTAGACCAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCTGGCAATTATCCCATTGCGCATGTCTCATATGACCTGAATGTCCTGGGCTCCAGGGGCCCAAGGATAATGCACTGTGTTATGGATGCCATCCCAGCTTCAGCTGTTGAGCCAGGAGGTGTGGCCCCTACACAAACTCAATTCCTGCATAGCAGAATTGATACTTCTCCATCTATTCCCTTCTTTAGGTCAAAATCAACTCGCTTGGAAAACTTACCCTTGTCTTCCCAAGACAAGGGAATGCTGGTATTACAAAACAAGTCCCCTAGGTGGCATGAGCAACTCCAGTGTTGGTGTCTAAACTTCAATGGGCGAGTGACTGTGGCTTCTGTAAAAAATTTCCAGCTGGTGGCTTCTCCAAAGAGCGGGGTTTCTGAACAGGCTCAGGAAAATGTTATTCTTCAGTTCGGAAAAGTGGGGAAGGATTTGTTTACGATGGATTATCAGTATCCAATCTCCGCTTTCGAAGCATTTGCAATATGTCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1215 0.456 MSFRSIIQDIKGEFGSISRKGFEVKFGYGMRSRSQSHRDAGDHVMVGDGLRQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACAGVCRSWRGIMKEIVKSPELSGKLTLPVSVKQPGPRNSLLQCYIKRHRSNQTYYLYLSLNQASVDDGKFLLAARKCRRPTHTDYIISINCKDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGTRVTKSRSTRPVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRLENLPLSSQDKGMLVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKSGVSEQAQENVILQFGKVGKDLFTMDYQYPISAFEAFAICLSSFDTKIACE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02587 404 SUPERFAMILY Tubby C-terminal domain-like 104 404 IPR025659 -
Accr5g02587 404 ProSitePatterns Tub family signature 2. 389 404 IPR018066 -
Accr5g02587 404 PANTHER TUBBY-RELATED 33 402 - -
Accr5g02587 404 Pfam Tub family 116 399 IPR000007 -
Accr5g02587 404 CDD F-box_AtTLP-like 55 99 - -
Accr5g02587 404 PRINTS Tubby superfamily signature 382 404 IPR000007 -
Accr5g02587 404 PRINTS Tubby superfamily signature 316 333 IPR000007 -
Accr5g02587 404 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Accr5g02587 404 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Accr5g02587 404 PRINTS Tubby superfamily signature 334 350 IPR000007 -
Accr5g02587 404 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Accr5g02587 404 PRINTS Tubby superfamily signature 361 380 IPR000007 -
Accr5g02587 404 Pfam F-box domain 55 101 IPR001810 GO:0005515
Accr5g02587 404 FunFam Tubby-like F-box protein 112 404 - -
Accr5g02587 404 Gene3D Tubby Protein; Chain A 111 404 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02587 Accr-Chr5 52188630 52191228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02587 1 404 TUB Transcription Factor Family AT2G47900 73.902 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr5g02587 Tub 8.5e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02587 K19600 - gmx:100809257 705.671