Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02563 ATGAAGATGATTCCCTGGGGTGGAGTCAGTTGCTGCTTGAGTGCGGCTGCTCTTTACCTTCTCGGGAGAAGCAGTGGCAGAGATGCGGAAATTCTTAAATCCGTTACCCGTGTCAACCAGTTAAAAGAATTAGCACAACTGTTAGATGCCGAAATATTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTGGTTCTGAAACCCCAATTAACTGTGAATTCAGTGGTTTAAGGGGTGTAATAGTTGAAGAAACGGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCGTGGATTCAAGATTCTGCTTTAATGCTGTCCATGAGTAAAGAAGTTCCTTGGTATCTGGATGATGGAACTGGTCATGTTCATGTGTTTGGAGCTCGTGGTGCTACTGGTTTTGTATTGCCTGTTGGAAGTGAAGCATTTGAAGAGTCAGGTCGATCACTTGTCCGCGGAACATTAGATTATCTCCAAGGTCTCAAGATGCTTGGAGTCAAGAGAATTGAACGAGTACTTCCAATTGGCACATCCTTGACGGTTGTTGGTGAGGCTGCTAAAGATGACATTGGAACCATCCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCAAAAACAATTGATCAGCTCATTGCCAATCTTGGGAAATGGGCAAGGTGGTATAAGTATGCATCTGTGGGCTTTACCCTTTTTGGTGCTTATTTAATAGCCAAGCATGCTATTCAATACATATTGGAAAGAAGACGACGCTGCGAACTGCAAAAGAGGGTTCTTGCTGCTGCTGCTAAGAGGTCAGGACAAGATAGTGAAGGCGAAAAGGCTGAAAGCTTACCAGATGGTGCAAAAAAGGATCGCATGATGCCCGATTTATGTGTAATATGCCTTGAGCACGACTACAATGCTGTTTTTGTTCCGTGTGGGCACATGTGCTGCTGTACGACATGTTCTTCTCACTTAACTAGTTGTCCTCTATGCCGGCGGCGGATAGAGCAGGTAGTGAAGACATTTCGTCATTGA 1026 0.4444 MKMIPWGGVSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLVVAISGRVGSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGHVHVFGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPIGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASVGFTLFGAYLIAKHAIQYILERRRRCELQKRVLAAAAKRSGQDSEGEKAESLPDGAKKDRMMPDLCVICLEHDYNAVFVPCGHMCCCTTCSSHLTSCPLCRRRIEQVVKTFRH 341
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02563 341 FunFam E3 ubiquitin-protein ligase SP1 282 340 - -
Accr5g02563 341 PANTHER - 2 308 IPR044231 GO:0004842|GO:0016567
Accr5g02563 341 Pfam E3 Ubiquitin ligase 87 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Accr5g02563 341 CDD RING-HC_LRSAM1 294 337 - -
Accr5g02563 341 Pfam Zinc finger, C3HC4 type (RING finger) 292 335 - -
Accr5g02563 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 340 IPR013083 -
Accr5g02563 341 SUPERFAMILY RING/U-box 287 335 - -
Accr5g02563 341 ProSiteProfiles Zinc finger RING-type profile. 294 329 IPR001841 -
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02563 3 274 C3H Transcription Factor Family AT1G63900 79.197 2.72e-158 442
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02563 5 51964262 51967085 Accr5g02563 5 51964262 51967085 ECH