Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02549 ATGGCTGCGCCGCCTCTCTCTTCCACGCTTCAGCCCATGCTCCAGTCCGCCGTCCAATCGGTTCAGTGGACGTACTGTCTCTTCTGGCAACCTTGTCCCCAACAAGGAAGGATTCTGGTGTGGGCGGATGGTTACTACAATGGGGCAATTAAGACTCGCAAAACAGTCCAACCAATGGAAGTTACTGCCGAGGAAGCCTCTCTCCAGAGAAGCCAGCAACTTAGGGAGCTCTACGAATCATTGTCGGCCGGAGAGACCAACCCTCCCGCTCGACGGCCTTGTGCCGCCTTGTCTCCTGAGGACCTCACCGAATCTGAATGGTTCTATTTGATGTGTGTCTCTTTCTCCTTTCCTCCTGGCGTCGGGTTACCGGGGAAAGCATATGCGAGGAGGCAGCATGTATGGCTTACCGGTGCGAACGAGGTCGACAGCAAAACGTTTTCAAGAGCTATTCTCGCCAAGAGTGCTCGCATACAGACCGTGGTGTGCATACCACTGTTGGACGGCGTCGTAGAGTTTGGCACAACAGATAAGGTTCAGGAAGACCTTAATTTTATCCAACATGTAAAGAGCTTCTTCATAGATCACCAGCGGCAGCACCACCCTCCTCCGCCGAAGCCCGCCCTCTCTGAGCACTCAACCTCCAACCCCACCACCTCTTCAGACCACTCCCGCTTCCAGTCCACGCCCATCCCCGCCGCCATGTACTCCGCTGTGGACCCATCACCGACCACCCCACCCGCTCCTGAAAACCAAATCAATGAAGATGACGACGACGATGATGAAGAAGAGGCCGAGTCCGACTCCGAGGCAGGAACAGCCCGGAACAGCGGCCCAACGTCTACGCCGGAGGCTTCAGGCGTGGCAGTTGCAACTGCAGCAGAACCAAGCGAGTTAATGCAGCTGGAGATGTCGGAGGATATCCGGGTAGGATCACCGGACGATGGCTCCAACAATCTCGACTCAGATTTCCATATGCTGGCGGTGAGCCACCCAGCGGATCACGAGCGACGGGCGGACTCGTACAGGGCCGAGTCGACCCGGAGGTGGGCCGAACCAATGCTCCAACTACCAGCTTCAGAAGGCGCTCAACTAGAAGAGCTCACACAAGAGGACACGCACTACTCTCAAACAGTGTCCACCATCCTCCACAATCAGTCTATCCGGTGGGCCGAATCTCCCTCCGTCGACTACATAACTTACTCCTCCCAATCCGCTTTTGCCAAGTGGAACACCCGTTCCGACCACCACCAACTCCTCCTCCAGCCGTCCCCCGACGGCACCTCTCAGTGGCTCCTCAAGTACATTTTGTTCACCGTTCCTTTCCTTCACGCCAAGTACCAAGACGACAACCCCCCCACGCCCCGAGATGGCGCCGATCCCGTCACGCGCCTACGTGGAAGGGGAACGCCGCAGGATGAGCTAAGCGCCAACCACGTACTGGCCGAGCGCCGCCGCCGCGAGAAGCTCAACGAGAGGTTCATCATATTGAGATCTCTCGTGCCCTTCGTCACAAAAATGGACAAGGCATCCATATTAGGGGACACCATCGAGTATGTGAAACAGTTGCGCAAAAAGATCCAAGATCTGGAGGCGTGTAACCGCCAGATGGAAGCAGAGCAACAACAGTCAAGGGAGCAACAGAGGAGCTTGACGAGAGTTGGGTCGGACAAGAGGAAGATGAGGATCGTGGAGGGGAGCGGAGGGATAAGGAAGCCGAAGTCAGTGGAGGCGTCACCGCCGCCATCGCCATCGGGAATGGTGACTTCGGTGCAAGTGTCGATCATAGAGAGCGATGCACTGTTGGAATTGGAGTGCGAGAACAGGGAAGGGTTGTTGCTGGATGTGATGCAAATGCTGAGAGAGATGAGGATAGAGGTGACGACGGTGCAGTCGTCGCTGAACAACGGGGTGTTCGTGGCGGAGCTGAGGGCGAAGGTGAAGGAAAATCCGAACGGAAAGAAGACCAGCATAGTTGAAGTGAAGAGGGCCCTCAACCAAATCATACCCCACAATGATTGA 2022 0.5613 MAAPPLSSTLQPMLQSAVQSVQWTYCLFWQPCPQQGRILVWADGYYNGAIKTRKTVQPMEVTAEEASLQRSQQLRELYESLSAGETNPPARRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTTDKVQEDLNFIQHVKSFFIDHQRQHHPPPPKPALSEHSTSNPTTSSDHSRFQSTPIPAAMYSAVDPSPTTPPAPENQINEDDDDDDEEEAESDSEAGTARNSGPTSTPEASGVAVATAAEPSELMQLEMSEDIRVGSPDDGSNNLDSDFHMLAVSHPADHERRADSYRAESTRRWAEPMLQLPASEGAQLEELTQEDTHYSQTVSTILHNQSIRWAESPSVDYITYSSQSAFAKWNTRSDHHQLLLQPSPDGTSQWLLKYILFTVPFLHAKYQDDNPPTPRDGADPVTRLRGRGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLEACNRQMEAEQQQSREQQRSLTRVGSDKRKMRIVEGSGGIRKPKSVEASPPPSPSGMVTSVQVSIIESDALLELECENREGLLLDVMQMLREMRIEVTTVQSSLNNGVFVAELRAKVKENPNGKKTSIVEVKRALNQIIPHND 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02549 673 MobiDBLite consensus disorder prediction 196 290 - -
Accr5g02549 673 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 193 IPR025610 -
Accr5g02549 673 PANTHER TRANSCRIPTION FACTOR TT8 7 671 - -
Accr5g02549 673 Gene3D - 475 549 IPR036638 GO:0046983
Accr5g02549 673 Pfam Helix-loop-helix DNA-binding domain 477 524 IPR011598 GO:0046983
Accr5g02549 673 MobiDBLite consensus disorder prediction 211 231 - -
Accr5g02549 673 MobiDBLite consensus disorder prediction 252 268 - -
Accr5g02549 673 SMART finulus 480 529 IPR011598 GO:0046983
Accr5g02549 673 MobiDBLite consensus disorder prediction 447 477 - -
Accr5g02549 673 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 474 523 IPR011598 GO:0046983
Accr5g02549 673 MobiDBLite consensus disorder prediction 271 287 - -
Accr5g02549 673 Gene3D - 599 669 - -
Accr5g02549 673 MobiDBLite consensus disorder prediction 566 588 - -
Accr5g02549 673 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 476 547 IPR036638 GO:0046983
Accr5g02549 673 Coils Coil 520 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02549 Accr-Chr5 51832553 51838682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02549 309 672 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 40.162 6.90e-61 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g02549 bHLH-MYC_N 6e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02549 - - zju:107426439 924.465