Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02546 ATGGCTGCGCCGCCTCTCTCTTCCACGCTTCAGCCCATGCTCCAGTCCGCCGTCCAATCGGTTCAGTGGACGTACTGTCTCTTCTGGCAACCTTGTCCCCAACAAGGGATTCTGGTGTGGGCGGATGGTTACTACAATGGGGCAATTAAGACTCGCAAAACAGTCCAACCAATGGAAGTTACTGCCGAGGAAGCCTCTCTCCAGAGAAGCCAGCAACTTAGGGAGCTCTACGAATCATTGTCGGCCGGAGAGACCAACCCTCCCGCTCGACGGCCTTGTGCCGCCTTGTCTCCTGAGGACCTCACCGAATCTGAATGGTTCTATTTGATGTGTGTCTCTTTCTCCTTTCCTCCTGGCGTCGGGTTACCGGGGAAAGCATATGCGAGGAGGCAGCATGTATGGCTTACCGGTGCGAACGAGGTCGACAGCAAAACGTTTTCAAGAGCTATTCTCGCCAAGAGTGCTCGCATACAGACCGTGGTGTGCATACCACTGTTGGACGGCGTCGTAGAGTTTGGCACAACAGATAAGGTTCAGGAAGACCTTAATTTTATCCAACATGTAAAGAGCTTCTTCATAGATCACCAGCGGCAGCACCACCCTCCTCCGCCGAAGCCCGCCCTCTCTGAGCACTCAACCTCCAACCCCACCACCTCTTCAGACCACTCCCGCTTCCAGTCCACGCCCATCCCCGCCGCCATGTACTCCGCTGTGGACCCATCACCGACCACCCCACCCGCTCCTGAAAACCAAATCAATGAAGATGACGACGACGATGATGAAGAAGAGGCCGAGTCCGACTCCGAGGCAGGAACAGCCCGGAACAGCGGCCCAACGTCTACGCCGGAGGCTTCAGGCGTGGCAGTTGCAACTGCAGCAGAACCAAGCGAGTTAATGCAGCTGGAGATGTCGGAGGATATCCGGGTAGGATCACCGGACGATGGCTCCAACAATCTCGACTCAGATTTCCATATGCTGGCGGTGAGCCACCCAGCGGATCACGAGCGACGGGCGGACTCGTACAGGGCCGAGTCGACCCGGAGGTGGGCCGAACCAATGCTCCAACTACCAGCTTCAGGCGCTCAACTAGAAGAGCTCACACAAGAGGACACGCACTACTCTCAAACAGTGTCCACCATCCTCCACAATCAGTCTATCCGGTGGGCCGAATCTCCCTCCGTCGACTACATAACTTACTCCTCCCAATCCGCTTTTGCCAAGTGGAACACCCGTTCCGACCACCACCAACTCCTCCTCCAGCCGTCCCCCGACGGCACCTCTCAGTGGCTCCTCAAGTACATTTTGTTCACCGTTCCTTTCCTTCACGCCAAGTACCAAGACGACAACCCCCCCACGCCCCGAGATGGCGCCGATCCCGTCACGCGCCTACGTGGAAGGGGAACGCCGCAGGATGAGCTAAGCGCCAACCACGTACTGGCCGAGCGCCGCCGCCGCGAGAAGCTCAACGAGAGGTTCATCATATTGAGATCTCTCGTGCCCTTCGTCACAAAAATGGACAAGGCATCCATATTAGGGGACACCATCGAGTATGTGAAACAGTTGCGCAAAAAGATCCAAGATCTGGAGGCGTGTAACCGCCAGATGGAAGCAGAGCAACAACAGTCAAGGGAGCAACAGAGGAGCTTGACGAGAGTTGGGTCGGACAAGAGGAAGATGAGGATCGTGGAGGGGAGCGGAGGGATAAGGAAGCCGAAGTCAGTGGAGGCGTCACCGCCGCCATCGCCATCGGGAATGGTGACTTCGGTGCAAGTGTCGATCATAGAGAGCGATGCACTGTTGGAATTGGAGTGCGAGAACAGGGAAGGGTTGTTGCTGGATGTGATGCAAATGCTGAGAGAGATGAGGATAGAGGTGACGACGGTGCAGTCGTCGCTGAACAACGGGGTGTTCGTGGCGGAGCTGAGGGCGAAGGTGAAGGAAAATCCGAACGGAAAGAAGACCAGCATAGTTGAAGTGAAGAGGGCCCTCAACCAAATCATACCCCACAATGATTGA 2016 0.562 MAAPPLSSTLQPMLQSAVQSVQWTYCLFWQPCPQQGILVWADGYYNGAIKTRKTVQPMEVTAEEASLQRSQQLRELYESLSAGETNPPARRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTTDKVQEDLNFIQHVKSFFIDHQRQHHPPPPKPALSEHSTSNPTTSSDHSRFQSTPIPAAMYSAVDPSPTTPPAPENQINEDDDDDDEEEAESDSEAGTARNSGPTSTPEASGVAVATAAEPSELMQLEMSEDIRVGSPDDGSNNLDSDFHMLAVSHPADHERRADSYRAESTRRWAEPMLQLPASGAQLEELTQEDTHYSQTVSTILHNQSIRWAESPSVDYITYSSQSAFAKWNTRSDHHQLLLQPSPDGTSQWLLKYILFTVPFLHAKYQDDNPPTPRDGADPVTRLRGRGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLEACNRQMEAEQQQSREQQRSLTRVGSDKRKMRIVEGSGGIRKPKSVEASPPPSPSGMVTSVQVSIIESDALLELECENREGLLLDVMQMLREMRIEVTTVQSSLNNGVFVAELRAKVKENPNGKKTSIVEVKRALNQIIPHND 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02546 671 MobiDBLite consensus disorder prediction 270 286 - -
Accr5g02546 671 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 474 545 IPR036638 GO:0046983
Accr5g02546 671 PANTHER TRANSCRIPTION FACTOR TT8 7 669 - -
Accr5g02546 671 MobiDBLite consensus disorder prediction 564 586 - -
Accr5g02546 671 MobiDBLite consensus disorder prediction 195 289 - -
Accr5g02546 671 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 472 521 IPR011598 GO:0046983
Accr5g02546 671 Coils Coil 518 548 - -
Accr5g02546 671 Gene3D - 473 547 IPR036638 GO:0046983
Accr5g02546 671 Pfam Helix-loop-helix DNA-binding domain 475 522 IPR011598 GO:0046983
Accr5g02546 671 MobiDBLite consensus disorder prediction 445 476 - -
Accr5g02546 671 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 192 IPR025610 -
Accr5g02546 671 MobiDBLite consensus disorder prediction 210 230 - -
Accr5g02546 671 SMART finulus 478 527 IPR011598 GO:0046983
Accr5g02546 671 MobiDBLite consensus disorder prediction 251 267 - -
Accr5g02546 671 Gene3D - 597 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02546 Accr-Chr5 51832553 51838682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02546 308 670 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 40.270 4.62e-61 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g02546 bHLH-MYC_N 1.3e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02546 - - zju:107426439 925.235