Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02518 ATGGATTACCCGTATCCAGTGAAAGAAGAGTATCTGGAAGCGACTTCATCTCATTCAGGAGGTGAAGCATCAACGATCCTCCCTCCGCAGCCAATGGAGGGGCTACACGAGCTGGGGCCACCACCATTTCTGACCAAGACATTCGACGTGGTGGACGACCCAATTACCAATCATATGGTTTCTTGGAGCAGAGGGGGCACTAGTTTCGTGGTTTGGGATCCACATGCCTTATCTACGAGCCTCCTTCCCAGATACTTTAAGCACAACAATTTCTCAAGCTTTGTCAGGCAATTGAACACTTATGGATTTCGGAAAATTGATCCAGACAGATGGGAGTTTGCAAATGAAGGATTTCTGAGAGGTCACAGGCATCTTCTGAGGAACATAAGAAGAAGGAAGGCACCTGCTAATTTGAGTCTTTCCCAACAAGCACAACCGCAGGGTTATTGTGTTGAGGTGGGAAGTTTTGGACTGGGCGAAGAGATTGACCATTTGAGGCGAGACAAGCAGGTGTTAATGATGGAGTTGGTGAGGCTTAGGCAGCAGCAACAGAACACTAGATCATACCTTCAGGCAATGGAACAAAGGTTACAGGGCACTGAAAAAAAACAGCAACAGATGATGGCTTTCTTAGCCAGAGCCATGAAAAATCCAGCCTTTCTCCAGCAACTACTCCAACAGAAAGACAAGAGAAAGGAGCTTGAAGAAGCCATAACTAAGAAGAGGAGAAGGCCAATTGAGCAAGGACCAAGTTGTGTTGGGCAATCAAGCAGTGGAGGTGAAGCAATGAACCCTATAAAAGCTGAGCCTTTAGAATTTGGTAACTATGTCTATGAAGTGTCAGAACTGGAAGCGTTAGCCATGGAAATGCAGGGTTATGGTAGGGGGAGAAGAGAACAGGAGGCGTCAGAAGAACCACGGGGGAGGCTGGGAAAAGAACTTGATGAGGGTTTCTGGGAAGAACTGTTCAGTGAGGATTTTGGGGGTGAAATAGACATTCCAAGCCCTGAAGGTGAAGGTGAAGATGAAGATGTCAATGTCTTGGCCAATCGCTTAGGCTACTTGGTTTCGAGTCCTAAGTAA 1083 0.4672 MDYPYPVKEEYLEATSSHSGGEASTILPPQPMEGLHELGPPPFLTKTFDVVDDPITNHMVSWSRGGTSFVVWDPHALSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLRNIRRRKAPANLSLSQQAQPQGYCVEVGSFGLGEEIDHLRRDKQVLMMELVRLRQQQQNTRSYLQAMEQRLQGTEKKQQQMMAFLARAMKNPAFLQQLLQQKDKRKELEEAITKKRRRPIEQGPSCVGQSSSGGEAMNPIKAEPLEFGNYVYEVSELEALAMEMQGYGRGRREQEASEEPRGRLGKELDEGFWEELFSEDFGGEIDIPSPEGEGEDEDVNVLANRLGYLVSSPK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02518 360 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 256 IPR027725 -
Accr5g02518 360 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g02518 360 Coils Coil 162 182 - -
Accr5g02518 360 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g02518 360 Gene3D - 36 133 IPR036388 -
Accr5g02518 360 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g02518 360 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g02518 360 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g02518 360 MobiDBLite consensus disorder prediction 243 265 - -
Accr5g02518 360 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g02518 360 Coils Coil 224 244 - -
Accr5g02518 360 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Accr5g02518 360 MobiDBLite consensus disorder prediction 295 314 - -
Accr5g02518 360 FunFam Heat shock transcription factor 1 36 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02518 Accr-Chr5 51527137 51528960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02518 24 358 HSF AT3G22830 54.223 7.54e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr5g02518 HSF_DNA-bind 4.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02518 K09419 - gmx:100794264 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g01931 2 53684279 53685422 Accr5g02518 5 51527137 51528960 CCT