Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02517 ATGTTTCCTTCAGCCATGTCCAATTCTGCTTCTTTGTCTGAAGAAGCCACTGTCTCTTTCTCTTCCGGTACTAGACTCCAGAACTTCACCGAACCAAGTCACATCGTTTCAACCATCCCTGACCCTCCTCAGCAGCCTGAAAAGACAAAGAGAAAAAGAAGCCTCCCTGGTAATCCAGACCCAGATGCCGAGGTGATTGCGTTATCCCCAAACACCCTTCTGGCCACCAATAGATATGTGTGTGAAATCTGCAACAAGGGTTTTCAGAGAGATCAGAACCTTCAGCTACACAGGAGAGGGCATAACCTTCCATGGAAGCTGAAACAAAGGAACAGCAAGGAGGTGAAAAAGAGAGTTTATGTTTGCCCCGAGCCTTCTTGTGTTCACAACAATCCCTCCAGAGCCCTGGGTGACCTCACGGGTGTTAAGAAACACTATTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTCACAAGTGCTCCAGAATTTACGCTGTTCTGTCTGATTGGAAAGCTCACTCCAAAACCTGTGGAACTAGAGAATACAGATGTGATTGCGGAACCGTTTTCTCCAGGAAGGACAGCTTTATAACTCATAGGGCATTTTGTGATGCCTTGGCTGAAGAAAGTGCAAGGCTCGCTGCTAATCAACTAGCTTCCGCAAACCCATTGTTATTTCAATCTCTCTTCCCTTACCAAAATCAAATCGTGATGAATCCGTGGGACCCATCTTCTCAAGAAAACCCTAACCCTAATAACATGGATGCCGTCCAAATCAAGACGGAAGCTCAGAGTTTTGAGGTCCCATGCCTCTCTTCTCCGACGCCATTTCTTCAAGTGCAGCAGCAGAATCAGAAAAACATGATAAACCCTTTCTTGGGAACTCTCCATGTGCCCTCAAACGCCGCCATGTCGGCCCACCTGTCAACCACTGCGCTCCTCAGGAAGGCTGCAATTGTGGGCTCCACTGCCATCGCAGCAGGCCCAGGTGCTGCCGCTGCAGCTGGTGGTGGTGGGCCCCAGGCAACGATGCCTCACGTGACTCAGCCAAGCACGGGCGAGTTTGGACCTCCGACTCAGCAGACCGACTTGGGGGGTCACGATTACGTTGGAGGGCTCATGACCCGGAATCAGAGTGAACGTCTGACCAGGGACTTCCTCGGCCTGACCGCCTATGTAGACGGCGGAAGAAACGGTGGTTCCGTTGACGTTGGCCTGAACGCGAAGGATATGCTGGTGTTCACTGGGGGCGTAGAGTATGATCCATATCTTGCATACGATCACCATTATCACTCACTCCTCAAGTCCCAACAAGATTTTGGATTCTTTGGGACTGTCACTGCCCCGGCGACGTGGGGGAGCTCTTGA 1368 0.5058 MFPSAMSNSASLSEEATVSFSSGTRLQNFTEPSHIVSTIPDPPQQPEKTKRKRSLPGNPDPDAEVIALSPNTLLATNRYVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRVYVCPEPSCVHNNPSRALGDLTGVKKHYCRKHGEKKWKCHKCSRIYAVLSDWKAHSKTCGTREYRCDCGTVFSRKDSFITHRAFCDALAEESARLAANQLASANPLLFQSLFPYQNQIVMNPWDPSSQENPNPNNMDAVQIKTEAQSFEVPCLSSPTPFLQVQQQNQKNMINPFLGTLHVPSNAAMSAHLSTTALLRKAAIVGSTAIAAGPGAAAAAGGGGPQATMPHVTQPSTGEFGPPTQQTDLGGHDYVGGLMTRNQSERLTRDFLGLTAYVDGGRNGGSVDVGLNAKDMLVFTGGVEYDPYLAYDHHYHSLLKSQQDFGFFGTVTAPATWGSS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02517 455 Gene3D Classic Zinc Finger 78 102 - -
Accr5g02517 455 SMART c2h2final6 120 150 IPR013087 -
Accr5g02517 455 SMART c2h2final6 155 175 IPR013087 -
Accr5g02517 455 SMART c2h2final6 79 101 IPR013087 -
Accr5g02517 455 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Accr5g02517 455 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 392 IPR031140 -
Accr5g02517 455 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Accr5g02517 455 MobiDBLite consensus disorder prediction 1 64 - -
Accr5g02517 455 FunFam protein indeterminate-domain 12-like 58 126 - -
Accr5g02517 455 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Accr5g02517 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Accr5g02517 455 MobiDBLite consensus disorder prediction 1 44 - -
Accr5g02517 455 Gene3D Classic Zinc Finger 114 203 - -
Accr5g02517 455 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02517 Accr-Chr5 51515200 51517894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02517 1 444 IDZ Gene Family AT4G02670 48.043 9.67e-122 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr5g02517 zf-C2H2 0.0031 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02517 K25870 - qsa:O6P43_010584 536.184