Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02501 ATGGAAGTTATAGGACTGAAGAAGGAGAAGATGGGATTCGAGGAAACGGAGCTGAGGCTTGGACTGCCTGGTGCCGAAGCTGCGAGGAAGAGAGGTTTTTGTGAGACCGAGACGACTGAGGACAACAAAAATGGCACTGTGGATTTGATGCTCAATCTCTCTTCTTCCAAAGAAGCAGATCATTCCACCGACAAACCCAAGGAGAAGACTCTTCTTCCTGCCGATCCCGCCAAGCCTCCTGCCAAGGCACAAGTGGTGGGATGGCCACCGGTGAGATCGTTCCGGAAGAACATGTTAGCACAGAAGAAGAGCGGAGAAGAGAGTGATCAGAAAAGCAGCCCTAATGGAAGCTTCGTGAAAGTGAGCATGGACGGAGCTCCATATCTTCGCAAGGTGGACCTCAAGATGTACAAGAGCTATCAAGACTTCTCTGATGCCTTGGGCAACATGTTCAGCTCCTTCACTATTGGGAATTGTGGATCCCAAGGACTGAAGGATTTCATGAATGAGAGTAAGCTGATGGATCTGTTGAACAGCTCCGACTATGTCCCGACCTATGAGGACAAGGATGGCGACTGGATGCTTGTCGGTGATGTCCCTTGGGAGATGTTCGTTGAATCCTGCAAGCGCTTGCGTATTATGAAAGGAAAGGAGGCCATTGGGCTTGCACCAAGGGCCATGGAGAAGGTAAAGAACCGAAGCTAG 705 0.5021 MEVIGLKKEKMGFEETELRLGLPGAEAARKRGFCETETTEDNKNGTVDLMLNLSSSKEADHSTDKPKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAQKKSGEESDQKSSPNGSFVKVSMDGAPYLRKVDLKMYKSYQDFSDALGNMFSSFTIGNCGSQGLKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKVKNRS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02501 234 FunFam Auxin-responsive protein 111 226 - -
Accr5g02501 234 Pfam AUX/IAA family 15 225 IPR033389 -
Accr5g02501 234 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 221 IPR003311 GO:0005634|GO:0006355
Accr5g02501 234 MobiDBLite consensus disorder prediction 26 85 - -
Accr5g02501 234 MobiDBLite consensus disorder prediction 43 57 - -
Accr5g02501 234 SUPERFAMILY CAD & PB1 domains 111 215 - -
Accr5g02501 234 ProSiteProfiles PB1 domain profile. 116 216 IPR000270 GO:0005515
Accr5g02501 234 MobiDBLite consensus disorder prediction 58 72 - -
Accr5g02501 234 Gene3D - 110 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02501 Accr-Chr5 51332873 51335014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02501 95 224 B3 DNA Binding Superfamily AT4G23980 29.231 1.01e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr5g02501 AUX_IAA 5.9e-83 CL0072