Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02496 ATGGTGAATCAGGTAGTAAAAGTGAGGAGGGAAACTCTTGTAGCATGCATGACTTGCCCACTCTGCAACAAGCTGTTCAGAGACGCAACCACCATATCTGAATGTCTTCATACGTTTTGCAGGAAATGCATCTATGATAAAATTACAGATGAGGAATTAGAACACTGTCCAATCTGTAATACTGATCTGGGCTGTGTTCCGCTTGAGAAATTGAGGCCAGACCACAACATACAAGATGTAAGAGCTAAAACTTTCCCTTTGAAGAGAAGAAAGGAAAAAACACCTGAGGCTGTTCCATCTATAACAATACGAGCCAGAAGAAAGGAGAAATCACTTTCATCTTTGGTTGTCAGCACTCCCAGAGTATCAACACAGGTACCCATGACTGGGAGAAGAACAAAACCAACTAGAAAGGCCAGTGGTCCACGAGCCTCTAGTTTTTCCATTGAAAAGCCTGTTAAAAAAGAGGAATCAGTAGAAGATCATACTGAGAGTTCAAGCTCTCCAGACACTTTGAACAAGTGTACTCAAAACACCAAACAGAATTTGTCCCCTCTTGAGTCTAACCAATCCTTACACACCAAAGAGGGATATAATGGAGCGGAACCTAGGGAAGCAAAATTGGATCTTTGGACACCTTTGAATTTTTTGGTAGAAGTGGCAAGTAGGAGTAAATCTTTCAAGTCTAGTGTGCAAGGGTCTGATGCTAAACAAGAACCCGTGCAAATAAATGAGAACGACTCTCAAGTGCAAAAATCCAAAAATAAAGAGAATAAGCGCAAAGCCAAAGTTGAGCCTGAAAAAATGGATGCAGATCCTACCTCTTTAAATACAGGAAAGCCTAATAAGACACGCAAAGTTCGTCGTAAAAGGGAGCCTCTTTTTGGAGAACCAGGCATATCACCTCAAGCTGTTCTGAATGCCAACATCGCTACATTCAAAAGGAGAACTGGTCCACTTTGGTTCGCCTTAGTAGCTTCTGAAGATCAGGAAGGAGATGCACCCATGGCCCAAATTCCTGCAAGTTATTTAAGAATAAAGGATGGAAGTTTACCCGTGTCATTTATACACAAATACCTAATGAAGAAACTAGAGCTGAGCAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGGTCCCTACGTTGCAACTCTGTAGTTTGGTTGACTTGTGGCTCCGGACAGCATCTACGACACAGCGAATTCCAGCAACTATTGGGTCCTCAGCGAAGGATTTTGTAATGGTTCTAGCTTACACGCGCAAGGTTCCACACCATTGA 1287 0.4235 MVNQVVKVRRETLVACMTCPLCNKLFRDATTISECLHTFCRKCIYDKITDEELEHCPICNTDLGCVPLEKLRPDHNIQDVRAKTFPLKRRKEKTPEAVPSITIRARRKEKSLSSLVVSTPRVSTQVPMTGRRTKPTRKASGPRASSFSIEKPVKKEESVEDHTESSSSPDTLNKCTQNTKQNLSPLESNQSLHTKEGYNGAEPREAKLDLWTPLNFLVEVASRSKSFKSSVQGSDAKQEPVQINENDSQVQKSKNKENKRKAKVEPEKMDADPTSLNTGKPNKTRKVRRKREPLFGEPGISPQAVLNANIATFKRRTGPLWFALVASEDQEGDAPMAQIPASYLRIKDGSLPVSFIHKYLMKKLELSSETEVEIKCMGQPVVPTLQLCSLVDLWLRTASTTQRIPATIGSSAKDFVMVLAYTRKVPHH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02496 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Accr5g02496 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Accr5g02496 428 SMART ring_2 19 59 IPR001841 -
Accr5g02496 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Accr5g02496 428 MobiDBLite consensus disorder prediction 225 298 - -
Accr5g02496 428 MobiDBLite consensus disorder prediction 165 196 - -
Accr5g02496 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 109 IPR013083 -
Accr5g02496 428 MobiDBLite consensus disorder prediction 225 249 - -
Accr5g02496 428 SUPERFAMILY RING/U-box 13 76 - -
Accr5g02496 428 MobiDBLite consensus disorder prediction 250 270 - -
Accr5g02496 428 MobiDBLite consensus disorder prediction 112 197 - -
Accr5g02496 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 424 IPR044807 GO:0004842
Accr5g02496 428 CDD RING-HC_PCGF 17 60 - -
Accr5g02496 428 MobiDBLite consensus disorder prediction 149 164 - -
Accr5g02496 428 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02496 Accr-Chr5 51296542 51301950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02496 3 347 C3H Transcription Factor Family AT2G30580 53.448 1.52e-111 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02496 K16277 - gmx:100815540 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g01958 2 54019315 54024538 Accr5g02496 5 51296542 51301950 CCT