Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02480 ATGGAAGGAAACTATGTGAGAAGAGATCAGAAGCATGGAGAAGAAAACGTGAGCTTGGAGGAGCAATATTCATGGGGAAGCTCATGGCCAGCAAGAAATTACTCATGTAGCTTCTGCAAGAGAGAGTTCAGGTCAGCTCAAGCTTTGGGTGGCCATATGAACGTGCACAGGAGAGATAGGGCTAGACTCAGATCAGGCATAATACCACCGTTTTGGCTTCATAATTCTGATTCATCTCTTAAACCTAACCCTATAACCTCAAGGCCACCTTCTAATAACCCAACTTCCTTTTCTGCTCATGCTCCTTCTCTCACTTTGTCTTCTTCCGCGAGTGATGACAATAATAAGAAACCACCAGTGCTCGTCACGTCTTCTTCTTCCAAGCTCCCCCTTCTGAGCCCTCAGAGCAGAGAAATGATCATGAATGGTGGCAACACGAGGAGTGGAATTAGATCAGTTAACGAGGAATTGAAGAAGGGATGTGCACAGGAGAAAGGGCTTAAGGGTTTCGAGGACATTAAGGAGGATAATATTACGTTGGAGCTGGGTTTAGGGTTGCTTCAACACCCAAAGGAGCAAATAGATTTGGAGCTTCGACTCGGCCATTTCTAG 612 0.4559 MEGNYVRRDQKHGEENVSLEEQYSWGSSWPARNYSCSFCKREFRSAQALGGHMNVHRRDRARLRSGIIPPFWLHNSDSSLKPNPITSRPPSNNPTSFSAHAPSLTLSSSASDDNNKKPPVLVTSSSSKLPLLSPQSREMIMNGGNTRSGIRSVNEELKKGCAQEKGLKGFEDIKEDNITLELGLGLLQHPKEQIDLELRLGHF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02480 203 PANTHER OS07G0101800 PROTEIN 12 202 - -
Accr5g02480 203 SMART c2h2final6 34 56 IPR013087 -
Accr5g02480 203 MobiDBLite consensus disorder prediction 78 149 - -
Accr5g02480 203 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Accr5g02480 203 MobiDBLite consensus disorder prediction 1 22 - -
Accr5g02480 203 Gene3D Classic Zinc Finger 13 66 - -
Accr5g02480 203 Pfam C2H2-type zinc finger 34 58 - -
Accr5g02480 203 MobiDBLite consensus disorder prediction 1 18 - -
Accr5g02480 203 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
Accr5g02480 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02480 Accr-Chr5 51142515 51143126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02480 15 201 C2H2 Transcription Factor Family AT3G23130 35.602 2.36e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr5g02480 zf-C2H2_6 1.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02480 - - pcin:129305638 278.1