Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02478 ATGGCTTCTTCTGGCTCTTCCTCTGCTTCTCCCTGCGGCGCTTGCAAGTTCCTCCGAAGAAAGTGCGCCGCCGATTGCATATTTGCGCCTTACTTCTGCTCCGATCAAGGCCCTGCCACATTTGCCGCCATTCATAAGGTGTTTGGTGCCAGTAATGTTTCTAAATTGCTCTTGCACATCCCCGCTCGTCATCGCTGTGAGGCCGTCCTCACTATTGCTTATGAGGCACAGGCTCGGATTAGAGACCCTGTTTATGGTTGTGTCGCTCACATCTTTGCCTTGCAACAACAGGTGGCGTGCTTGCAGGCCCAACTGATGCAAGTGAAAGCTCAAGTGGCGCACAAGAACCTAGAAACCCAGTGGGCACTGGGGAATCATCATAATATTGTGGGAGGTCATCAGGCAATGAATACTTACAACATCAATCCTATTTCTCCTCAGAGTTCTCTTGAGTTGATTGACCACAACATCGGCGATGGAATCAACGTGCAAGATATACGAAGTAGAGAGGAATTTCCATTCCCTAAAAGAAGATCTTATAACAATGATTTGGGCGAGCTCCATCAGCTTGCACTCAGGATGATGAGGAACTAG 594 0.4865 MASSGSSSASPCGACKFLRRKCAADCIFAPYFCSDQGPATFAAIHKVFGASNVSKLLLHIPARHRCEAVLTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQVAHKNLETQWALGNHHNIVGGHQAMNTYNINPISPQSSLELIDHNIGDGINVQDIRSREEFPFPKRRSYNNDLGELHQLALRMMRN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02478 197 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 123 - -
Accr5g02478 197 Coils Coil 91 111 - -
Accr5g02478 197 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Accr5g02478 197 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02478 Accr-Chr5 51126201 51126885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02478 1 197 AS2 family AT2G42430 53.012 1.79e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr5g02478 LOB 4.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02478 K13944 - tcc:18613181 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g01973 2 54283779 54284967 Accr5g02478 5 51126201 51126885 CCT