Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02460 ATGCCGTCCCTCATTTCTCCTGGGAAAATCCATCGGCTGGAGATGGAAAATTTCAAGTCTTACAAGGGTCTTCAAGTCATTGGTCCCTTCTACGACTTCACCGCAATTATTGGCCCCAATGGTGCTGGCAAGTCGAACCTTATGGATGCTATTAGCTTTGTGCTTGGTGTAAGGACAGGCCAGCTGCGTGGTGCTCAACTCAAGGATTTAATCTACGCGTATGACGACAAGGAAAAGGAGCAGAAGGGACGGAGGGCGTTCGTTCGTTTGGTTTATCAGCTGGGCAATGGGTCGGAGATCCAGTTCACCAGGACTATCACGAGCGCCGGCGCGAGCGAGTATCGGATTGATGGGAGCCCTGTAACGTGGGATGTGTATAATGCTAGGCTAAAGTCACTTGGCATTCTTGTTAAGGCTCGCAATTTCCTCGTGTTTCAGGGTGATGTGGAATCCATTGCATCGAAGAATCCGAAAGAGCTCACTGCCCTTCTTGAGCAGATATCTGGCTCTGATGAGCTCAAGAGAGACTATGAGCGATTTGAAGAAGAAAAAGCCACAGCTGAAGAAAAATCAGCCCTTGTTTTTCAGAGGAGGAAGACTGTAAGTTTGGAAAGAAAGCAGAAGAAGGTGCAAAAAGAAGAAGCAGAGAAACATATTCGTCTGCAGGATCAACTGAGAACTATAAAGGAAGAGCATTTCTTGTGGCAATTGTTCAATATAGAAAGAGATATTGAAAAGACAACTGATGGTCTTGAGGATGAGAAAAGAAGTCGAGAAGGTGTTATGGAAGAACTGGAAAAATTTGAAGCTGAAGCTAGTAAAAAGAAGAAAGAACAGGCAAAATATCTGAAAGAGATTACACAATGTGAAAGGAGAATTAGTGAGAAAAGCAACAAACTTGACAAGAATCAACCTGATCTTCTGAAGTTGAAAGAGGAAATGGCTCGTATTAACTCAAAAATTAAAAAAGGGAAGAAGGAGCTAGACAGAAAAAGGGAAGAACGGAGAAAACATGCTAATGATATAACGGAGCTACAGAGGGGTATACAAGATCTCACTGCCAAATTGGAAGATCTACAGGAAAAGAGTCGAGATGCTGGTGATGAACTAAAGTTAGATGGCAGTGACTTGGAGGAATATTTTCGAATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGTTAAGGGAGGAGAAAGAACTTCTGGATAGACAACAACACGCAGATAGTGAAGCTCAAAAAAATTTGGATGAAAATCTTCAACAATTAAGGAATAGGGAGTCTGAATTGAATTCACAAGAAGAACAGATGCAAACTAGGCTGAAAAAAATTCTTGATAATTCGACAAAACATAAGGATGACAAAGCAAATTTAGAGAAAGAATTGCGTGTGATGCAGGACAAACATCGAGATTCCAGGAAGAAATATGATAATTTGAAGTTGAAAATTGGTGAAATAGAAAATCAACTTCGAGAACTGAGGGCTGATCGATATGAAAATGAGAGAGATGCAAAATTGTCTCAAGCTGTGGAGAGTCTCAAACGCCTGTTTCAAGGAGTCCATGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCGGTTGTAGTTGAGGATGAAAAGACTGGAAAGGAATGCATCAAGTATTTGAAAGATCAGAGGCTTCCTCCTCAGACATTTATTCCTTTGCAATCAGTTCGCGTGAAGCCGATTATTGAAAGATTGCGCACATTAGGTGGCACTGCAAAGCTGGTTTTTGATGTTATTCAGTTTGATCCTGCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAGTTTTGAGCTGGAGTGGTGAGAGGTTCAAAGTTGTAACTGTGGATGGAACTCTGCTGACAAAATCTGGCACAATGACTGGTGGCACTAGTGGTGGGATGGAGGCTAGGTCAAAACAGTGGGATGACAAAAAGATTGAAGGCCTTAAGAAGAAAAAAGAGCAGTATGAATCAGAGTTGGAGGAAGTAGGATCAATAAGAGATATGCAACTTAAGGAGTCCGAAGCATCTGGAAAAATTAGTGGACTTGACAAGAAAATTCATTATGCTGATATTGAGAAGCGAAGCATTGAGGATAAGCTTTTAAATTTGAAGCGAGAGAAAGAGACAATCAAAGGAGAAATCGAACGGATCAGTCCAGAACTTCAGAAGTTAAATGGCATTGTTGAAAAGAGGAATGCTGACATACGTAAGCTAGAGAAGAGGATCAATGAAATTACTGATAGGATTTACAAAGATTTCAGCAAGTCGGTTGGGGTTGCTAACATTCGTGAGTATGAAGAAAATCAACTCAAGTCTGCTCAAAATGTTGCAGAGGAGAGGCTAAGCTTGAGCAGCCAGCTATCGAAGTTAAAATATCAGCTGGAGTATGAACAAAATCGGGATATGACCACACGAATTAGAGAACTTGAATCTTCTTTGAGTGCCCTTGAACATGACTTAAGACAGGTACAGCACAAAGAGGCTGAAACAAAGTTGGCGGCTGAAAAAGCTACTGAAGACATTAACCAGTTGAAGGAAGAAATTCAGGAGTGGAAATCAAAGTCTGAAGATTGTGAGAAGGATATCCAAGAATGGAAGAAGCGTGCTTCTTCAGCCACAACAAGCATATCTAAACTCAATCGTCAGATAAACTCAAAGGAGGCTCAGATTGAGCAGTTAATTGTGCTGAAGCAAGAAATTGTAGAGAAGTGTGAACTAGAACAACTTAGCCTGCCAATTATAGAAGATCCAATGGATACCGGTACCTCAATACCAGGTCCGGTTTTTGACTTTGATCAACTAAGTAGGGCTCTGAAGGATAGGAGGAACTCTGACAGAGACAAAATTGAGGTTGAGTTTAGGCAAAAAATGGATTCCCTGACATCCGAAATTGAAAGAACGGCACCAAATTTGAAGGCATTGGATCAATATGAGGCTCTGCTGGAAAAGGAAAGAGCTGTAAATGAAGAGTATGAAGTCGTCAGGAAAGAGGAGAGCGAGAAGTCTGCAAGGTTCACTGCGGTTAAGCAGAAGAGGTATGAGTTGTTCATGGACGCTTTCAACCACATATCCAGTAATATAGATAAAATATACAAACAACTTACAAAGAGCAACACACATCCGCTGGGTGGAACTGCATACTTAAACTTGGAAAATGAAGATGATCCATTTCTGCATGGAATCAAGTACACTGCTATGCCCCCAACAAAGCGATTCCGTGATATGGATCAGCTATCTGGTGGGGAGAAGACTGTTGCTGCACTTGCTTTCCTGTTCTCCATCCACAGTTACAAGCCTTCACCTTTTTTCATATTGGACGAAGTTGATGCTGCATTGGACAACTTAAATGTTGCAAAGGTTGCTGGATTTATTCGTTCGAAATCTTGTGAGGGAGCAAGGGCTAGTCAAGATGCTGATGGTAGCAGTGGCTTTCAAAGTATTGTGATATCCTTGAAAGACACCTTTTATGACAAAGCTGAAGCATTGGTTGGGGTTTACCGTGACTCAGAGAGAGGCTGTTCGAGAACTCTGACATTTGACCTGACCAACTACCGCGAGTCCTAA 3654 0.4168 MPSLISPGKIHRLEMENFKSYKGLQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAYDDKEKEQKGRRAFVRLVYQLGNGSEIQFTRTITSAGASEYRIDGSPVTWDVYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYERFEEEKATAEEKSALVFQRRKTVSLERKQKKVQKEEAEKHIRLQDQLRTIKEEHFLWQLFNIERDIEKTTDGLEDEKRSREGVMEELEKFEAEASKKKKEQAKYLKEITQCERRISEKSNKLDKNQPDLLKLKEEMARINSKIKKGKKELDRKREERRKHANDITELQRGIQDLTAKLEDLQEKSRDAGDELKLDGSDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNLDENLQQLRNRESELNSQEEQMQTRLKKILDNSTKHKDDKANLEKELRVMQDKHRDSRKKYDNLKLKIGEIENQLRELRADRYENERDAKLSQAVESLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIIERLRTLGGTAKLVFDVIQFDPALEKAILFAVGNTLVCDDLEEAKVLSWSGERFKVVTVDGTLLTKSGTMTGGTSGGMEARSKQWDDKKIEGLKKKKEQYESELEEVGSIRDMQLKESEASGKISGLDKKIHYADIEKRSIEDKLLNLKREKETIKGEIERISPELQKLNGIVEKRNADIRKLEKRINEITDRIYKDFSKSVGVANIREYEENQLKSAQNVAEERLSLSSQLSKLKYQLEYEQNRDMTTRIRELESSLSALEHDLRQVQHKEAETKLAAEKATEDINQLKEEIQEWKSKSEDCEKDIQEWKKRASSATTSISKLNRQINSKEAQIEQLIVLKQEIVEKCELEQLSLPIIEDPMDTGTSIPGPVFDFDQLSRALKDRRNSDRDKIEVEFRQKMDSLTSEIERTAPNLKALDQYEALLEKERAVNEEYEVVRKEESEKSARFTAVKQKRYELFMDAFNHISSNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMDQLSGGEKTVAALAFLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARASQDADGSSGFQSIVISLKDTFYDKAEALVGVYRDSERGCSRTLTFDLTNYRES 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02460 1217 Gene3D - 578 660 - -
Accr5g02460 1217 Coils Coil 170 190 - -
Accr5g02460 1217 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1217 - -
Accr5g02460 1217 Coils Coil 1004 1027 - -
Accr5g02460 1217 CDD ABC_SMC1_euk 1096 1211 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Accr5g02460 1217 Coils Coil 307 369 - -
Accr5g02460 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1159 IPR027417 -
Accr5g02460 1217 Coils Coil 412 502 - -
Accr5g02460 1217 PIRSF SMC 8 1214 IPR024704 GO:0005524|GO:0016887
Accr5g02460 1217 Coils Coil 829 926 - -
Accr5g02460 1217 Gene3D - 496 577 - -
Accr5g02460 1217 Coils Coil 251 285 - -
Accr5g02460 1217 SMART SMC_hinge_2 517 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Accr5g02460 1217 Coils Coil 723 743 - -
Accr5g02460 1217 Gene3D - 958 1216 IPR027417 -
Accr5g02460 1217 Gene3D - 8 230 IPR027417 -
Accr5g02460 1217 Coils Coil 675 695 - -
Accr5g02460 1217 Gene3D - 232 380 - -
Accr5g02460 1217 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Accr5g02460 1217 Coils Coil 751 778 - -
Accr5g02460 1217 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Accr5g02460 1217 SUPERFAMILY Smc hinge domain 481 682 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Accr5g02460 1217 Coils Coil 211 231 - -
Accr5g02460 1217 Pfam SMC proteins Flexible Hinge Domain 517 631 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Accr5g02460 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 266 IPR027417 -
Accr5g02460 1217 Pfam RecF/RecN/SMC N terminal domain 10 1198 IPR003395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02460 Accr-Chr5 50968055 50978203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02460 7 329 Structural Maintenance of Chromosomes family AT5G15920 25.758 5.81e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02460 K06636 - gmx:100785315 1917.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02460 5 50968055 50978203 Accr5g02460 5 50968055 50978203 ECH