Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02454 ATGGAGGAAGACGAAGACAGAAATTTGCTTAATAGTTTGGGCGTAGAGTCTGCCAATCACGAATGCATCGAAAGAGACGTATTAGCTGAGGCACAGAATGATGTGGTAACCATTACTGAAGCTGATGGGAGCTCAAAGGAAGAATCTACTCAGAAATATGAAAGTGCTAATCCATCATCTATTAGCAAAGCAGAACTTTATCATAAGTTGAGGGCAGTAGATGTCGAAATCAATGCAGTTGCTTCCACTATCCAGGAAGTGAGAAATATTGATAGTAATGGAGATTGTATTGATGGTGGTGGTGCCAACGGGGAGCAAGGGACTACCAAGGATGCTTCCTCCAATGATTTGAATATTCAACATGTTCTTGCTACTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTTGAAAAAGAGCTTTCAGATTTGTTCAAGGAGAAGCCTAGCAAAAGTATTGATTGGGACAAAGAGAATGAGATCTTTAATTTGGTTAAGGAAGATCGAAGATCCAAGAGGAAGCCTAAAGAAGTTAAAAGCTTACCAAAAGGCTCAGGGAAACGGCATAAAACAGTTTCATTTAATGATGATGTTGATTTTGATGCAGTTTTAGATGCCGCCTCAGCAGGCTTTGTTGAGACAGAAAGGGACCATTTGGTAAGGATAGGGATTTTGACCCCATTTTCTAACCTGAAGGGCTTTGAGCGCCGCTTTCAGCAATCAGAAGCATCTAGTAGGAGTCAAGAACAGAAGACAGATTATCTTACTTCTTCTAGTCTTGAAAGAGCTGCCTGCTCAATATCTGAGGCAGCCAGAGCTCGCCCAACCACCAAGTTACTTGAGTCTGAAGATCTGCCGAAGCTTGACGCACCCACTCATCCTTTTGTCAGACTCAAATTACCACTAAAACTTCCTCAGTCCCAAGAAAGAGAGCCAGAGAAGAAAAATAATTTGAAAAGGCATAAAAGGCGACCTTTGCCTGGTAGGAAATGGACAAAACGTGTTTCTAGTGAGGAAATACGTTCAAGAGAGACTGAGGAAGCAAGCAGATGCCTGGACCCTTCCAGTTGTGAAAATTTAGATGCTCAGGATTTTGAATGTGCTGATCATGAACCTTCTTTTATAACATTAGAAGGCGGGCTGAAAATCCCTGATAATATTTTTGATGCACTATTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGCGATGAGATGGGTCTTGGTAAAACCATCCAGGTTTTATCTTTTCTTGGTGCATTGCATTTTAGTGGTATGTATAAACCAAGCATTATCATTTGTCCTGTGACTCTCATGCGACAGTGGAAAAGGGAAGTTCAAAAATGGTACCCAAAATTTCATGTAGAGCTTTTACATGATTCTGCACGAGATCCTGATGTTAGAAAGAAGCAATCCAAATGTGATGAATCAGACTATGATAGTAATAGTTCAAGTGACAGTGACTATGAGACCAATATTCAATCAAAAAGCACAAGAAAATGGGAATCCCTGATAAGTCGGGTAATGGGAACGGACTCTGGATTGCTTATCACAACATATGAGCAGCTCAGAATATTGAGGGACCTATTACTCGACATTGAATGGGGTTATGCAATTCTTGATGAAGGACACAGAATAAGGAATCCAAATGCTGAAATTACTCTAGTTTGCAAACAGCTACAGACTGTACACCGCATCATAATGACTGGCTCACCTATACAGAACAAATTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCTGTTCCTATAGCACTGGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCATACAGGTGTGCTGTGATGCTTCGTGATTTGATCATGCCTTATCTTCTTCGGCGGATGAAAGCAGATGTGGATGCCCACCTTCCTAAGAAAACTGAGCATGTTTTATTTTGTAGTCTTACTACTGAGCAAGTATCTGCTTATAGAGCATTTTTGGCAAGCTCTGAAGTGGAGCAAATCTTGGATGGACGGAAGAATTCTCTTTATGGAATCGATGTAATGCGTAAGATTTGCAACCACCCTGACTTGCTTGAAAGGGAACATGCATTCAAAAATCCAGACTACGGAAATCCAGAACGCAGTGGCAAAATGAAAGTTGTGGCACAGGTACTTAATGTTTGGAAGGAACAGGGTCATCGAGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTATTGAGAACTTTTTGACCACTTCTGGTCATAATTACCGGAGAATGGATGGAGCCACTCCCATAAAACAAAGGATGGCTTTAATTGATGAATTTAATGAGTCAAGGGAAGTATTTATATTCCTTTTAACAACAAAAGTTGGGGGCTTGGGCACGAATCTTACTGGTGCAGACAGGGTGATTATCTTCGACCCTGATTGGAATCCTTCAACTGACGTTCAGGCCAGAGAACGAGCTTGGAGAATTGGTCAGACACGAGATGTGACAGTTTATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACTAATAAGATATTGAAGAACCCACAGCAGAAAAGATTCTTTAAAGCTCGAGATATGAAAGATCTTTTTACAATGAATGTGGATGACAAAAGTGGGTCAACTGAAACATCAACTATTTTCAGTCAAATTTCTGAAGATGTAAATATTGTTGGGGCACATGAAGATAAGCAGGATGAGCATAAACACCCCCAAACTGCTGATCCAAGTGCTGATGATGTTGTAGTTAATAGGGATGGCAGGTCAAAAACAAGATTGGTCAAGGGAAAGGGAAAAGAGGAAACGGATCAACTTAATGAAGCAGATGAGGAAACAAATATATTGAAAAGTCTTTTTGATGCCCATGGGTTACATAGCGCTGTGAACCATGATTTGATCGTGAATGCCAATGATGAGGAAAAGATGAGGCTGGAGGAGCAAGCTTCCCAGGTTGCACAGAGAGCCGCAGAAGCTTTACGCCAGTCTCGAAAACTCCGAAGCCATGACAGCATCACTGTTCCTACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCTTCCTCTTTTTTTCAAAAGTTTGGTTTAACCGTGAATTCCCAGTTGGTGAGTAATTGCAAAGAATCTGGTGAATTGACTGGTGATGGAACTAGAAAATTAAATGGATCTGCTGCTGGGACATCATCCGGTAAGGCATTATCTTCTGCTGAACTTTTGGCTCAAATCCGGGGTAACCAAGTAAAAGCCATTGGTGCTGGGCTGGAACATCAGTTTGGTATGGCCGTTTCTAATCAAGCAAGATCTGTGGATGTTGGATCCTCTAGGACTTCCAGAAAGATAGATGGAGTGCAACCTGAGGTATTGGTTCGGCAAATCTGTACATTTCTACAACAGAGAGGTGGTCGTTCTGATTCGTCCAGCATAGTCCAGCATTTTAAGGACAGGATACCCTCATCAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGGAAAAAGGACCAACTGGATCACACTGGATTCTGAAGCCTGACTATCAAGAATAG 3666 0.4135 MEEDEDRNLLNSLGVESANHECIERDVLAEAQNDVVTITEADGSSKEESTQKYESANPSSISKAELYHKLRAVDVEINAVASTIQEVRNIDSNGDCIDGGGANGEQGTTKDASSNDLNIQHVLATDRLESLKKTKAQLEKELSDLFKEKPSKSIDWDKENEIFNLVKEDRRSKRKPKEVKSLPKGSGKRHKTVSFNDDVDFDAVLDAASAGFVETERDHLVRIGILTPFSNLKGFERRFQQSEASSRSQEQKTDYLTSSSLERAACSISEAARARPTTKLLESEDLPKLDAPTHPFVRLKLPLKLPQSQEREPEKKNNLKRHKRRPLPGRKWTKRVSSEEIRSRETEEASRCLDPSSCENLDAQDFECADHEPSFITLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIICPVTLMRQWKREVQKWYPKFHVELLHDSARDPDVRKKQSKCDESDYDSNSSSDSDYETNIQSKSTRKWESLISRVMGTDSGLLITTYEQLRILRDLLLDIEWGYAILDEGHRIRNPNAEITLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIALGGYANASPLQVSTAYRCAVMLRDLIMPYLLRRMKADVDAHLPKKTEHVLFCSLTTEQVSAYRAFLASSEVEQILDGRKNSLYGIDVMRKICNHPDLLEREHAFKNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIIENFLTTSGHNYRRMDGATPIKQRMALIDEFNESREVFIFLLTTKVGGLGTNLTGADRVIIFDPDWNPSTDVQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTMNVDDKSGSTETSTIFSQISEDVNIVGAHEDKQDEHKHPQTADPSADDVVVNRDGRSKTRLVKGKGKEETDQLNEADEETNILKSLFDAHGLHSAVNHDLIVNANDEEKMRLEEQASQVAQRAAEALRQSRKLRSHDSITVPTWTGRSGTAGAPSSFFQKFGLTVNSQLVSNCKESGELTGDGTRKLNGSAAGTSSGKALSSAELLAQIRGNQVKAIGAGLEHQFGMAVSNQARSVDVGSSRTSRKIDGVQPEVLVRQICTFLQQRGGRSDSSSIVQHFKDRIPSSDLALFKNLLKEIATLEKGPTGSHWILKPDYQE 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02454 1221 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 404 603 IPR014001 -
Accr5g02454 1221 MobiDBLite consensus disorder prediction 332 349 - -
Accr5g02454 1221 CDD CSB_WHD 1151 1220 - -
Accr5g02454 1221 MobiDBLite consensus disorder prediction 167 191 - -
Accr5g02454 1221 MobiDBLite consensus disorder prediction 481 505 - -
Accr5g02454 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 914 IPR027417 -
Accr5g02454 1221 MobiDBLite consensus disorder prediction 38 59 - -
Accr5g02454 1221 Pfam SNF2-related domain 395 717 IPR000330 GO:0005524|GO:0140658
Accr5g02454 1221 FunFam DNA excision repair protein ERCC-6 660 938 - -
Accr5g02454 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 653 IPR027417 -
Accr5g02454 1221 Coils Coil 1012 1032 - -
Accr5g02454 1221 FunFam Protein CHROMATIN REMODELING 8 370 652 - -
Accr5g02454 1221 SMART helicmild6 766 849 IPR001650 -
Accr5g02454 1221 Gene3D - 376 652 IPR038718 -
Accr5g02454 1221 MobiDBLite consensus disorder prediction 301 349 - -
Accr5g02454 1221 SMART ultradead3 388 611 IPR014001 -
Accr5g02454 1221 MobiDBLite consensus disorder prediction 933 953 - -
Accr5g02454 1221 CDD SF2_C_SNF 735 860 - -
Accr5g02454 1221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 899 IPR001650 -
Accr5g02454 1221 Pfam Helicase conserved C-terminal domain 742 849 IPR001650 -
Accr5g02454 1221 PANTHER SNF2/RAD54 FAMILY MEMBER 150 1203 - -
Accr5g02454 1221 CDD DEXHc_ERCC6 392 602 - -
Accr5g02454 1221 Gene3D - 659 947 IPR027417 -
Accr5g02454 1221 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02454 Accr-Chr5 50874967 50881035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02454 692 903 RAD5 or RAD16-like Gene Family AT5G22750 31.163 3.86e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr5g02454 SNF2_N 5e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02454 K10841 - gmx:100820025 1753.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02454 5 50874967 50881035 Accr5g02454 5 50874967 50881035 ECH