Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02444 ATGAAGTGCCTATCATGCTCCGAGGAGCCATCAAGAGAAGAAGATGATATGGTTCCTTCATCTGAAGCTCTTGCAAACAAGGGTTGTTCAGCAAATGGGATTTCTTTTCAGACCAGTCAAATTGGCAAGATGCCAGATAATAGAAATATTGAGGAAATCGAATCATCCCTTTGTGGAAGTGGTTGTTTGAATTATGAGGAAGCTAGAGCTCGTTTAGGAAAATATGAATATCAGAAAGGAAATATAGAAGCTGCTTTACATTTTTTTGAGCGAATGGATACGGAGGTTGTAACTTCCATGATTAAAAGTTCTCTTTCCAAAAGGGGAAAGCACCACAAGAGACTTCGCCAGAAATATGCTACGCAATCATTGTCCATTCTTTCTGCTAGCGTACTGTTGGAAGCATTATTCCTAAAAGCAAAATCTCTGCAGGCTCTTGGAAAGTTTAAAGAAGCCGCCCTATCTTGCAAAGTCATTCCGGACATGGTTGAATCTTCATTACCCCAAGGCTTGCCTGAAAACTTTGGCGTTGGAGGTAAATTGCAGGAGACTCTGAGCAAGGTGATTGAGTTGCTTCCTGAATTGTGGAAACTTGCAGATAATCCACATGAAGCTATTATGTCCTACCGTCGGGCACTTCTTCATAAGTGGAATCTTAATGCAGAAACCAAAGCAAAGATTCAGAAAGATTTCTCTGTTTTTCTTCTATTTAGTGGAGAGGAAGCAAGTCCTCCCAGTCTTCGTTCCCAAATGGACACTTCATATGTACCCATGAATAACATAGAAGAGTCTATACTTCTTTTGATGATTCTGTTAAGACAGGTCTGTTGCAATCGAATTAAGTGGGATCCTTCAATTTTGGATCATCTTTCATTTGCTTTGTCTGTTTCTGGGGATTTGACGGCTTTAGCCAATCAATTGGAACAATTGCTCCCCTCCACTGTCAATCCAACAGAAAAATGCGAAACAATTGCTTTCTGTTATTATGGAGCAGGTCAGGACTCAGTGGCATTGGGACTTCTTAGAAAATTGTTATGTAGAAGAGAGGACCCAAAACATGTTTTAGCTTTGTTAATGGCTTCAAAGATTTGTTGTGAGAACCCTAATCTTGCTGGTGAAGGAATAAATTTTTCTTGCAGATTGCTTGAGAAATTGGAAGGAAGATGTGATCAGTTAGCAAGTTCTGCCAATTGCTTCCTTGGTCTTTCACTTTCAACACAGTCAAAATCGTCCATTTCTGATTCTGAGAGGGATAAAAGACAATCTGAGGCACTTCACAGCCTGGACATTGCCTCCAGAATGTCCAGAATGAGAAACCCCCTAATATTATACCATGTCAGTTTAGAATATGCTGAACAGAGAAAGTTGGATGCTGCCCTTTATTATGCCAAATGCTTGCTAGAACTGGAAGCAGGGTCTGATGTTAAAGGATGGTTATTATTAGCCAGGATATTATCAGCTCAAAGTCGATTCTTGGATGCTGAATCTGTTGTCGATGCTGCTCTGGATCAGACTGGGAAATGGGAACAAGGAAATTTGCTGCGAACAAAAGCTAAACTTCAGATTGCACAGGGCCATTTAAGGAGTGGCATGGAAACATATATTCAGCTTCTTGCTCTTCTTCAAATTCAGATCAGAAACTTTGGTTCTGAGAAGAAGCTAAATAACAACGATGATATCCAGGGACTGGAAATGGAAATATGGCATGATCTTGCTTTCTTATACATAAGCCAGTCAAAATGGCATGATGCAGAAGCGTGTCTTTCAAAGTCTAAGGCCATCAAGCTATACTCTGCTTCTAGATGTCACGCAACTGGTCTAATATATGAAGCAAAGGGCCTTTATAAAGAGGCTCAAAAAGCTTATCGTGAAGCTTTGGATATTGATCCCAACCATGTCCCAAGCTTGGTTTCTAGTGCTCTGGTTCTCAGAAGGTGCGGTAGTGGAAAATTGAATGCTGCAGGTCTAGGCTATCTTATGGATGCTCTAAGGCATGACAGAATGAATGCTTCTGCTTGGTACCATCTTGGCCTTCTTCACAAGGCTGAGGGTTCTGTATCGTCATTAATTGAAGCCATGGAATGTTTCCAGGCTGCGCACTGTCTTGAAGAAACTGCACCAGTTGAGCCTTTCCGATGA 2139 0.4105 MKCLSCSEEPSREEDDMVPSSEALANKGCSANGISFQTSQIGKMPDNRNIEEIESSLCGSGCLNYEEARARLGKYEYQKGNIEAALHFFERMDTEVVTSMIKSSLSKRGKHHKRLRQKYATQSLSILSASVLLEALFLKAKSLQALGKFKEAALSCKVIPDMVESSLPQGLPENFGVGGKLQETLSKVIELLPELWKLADNPHEAIMSYRRALLHKWNLNAETKAKIQKDFSVFLLFSGEEASPPSLRSQMDTSYVPMNNIEESILLLMILLRQVCCNRIKWDPSILDHLSFALSVSGDLTALANQLEQLLPSTVNPTEKCETIAFCYYGAGQDSVALGLLRKLLCRREDPKHVLALLMASKICCENPNLAGEGINFSCRLLEKLEGRCDQLASSANCFLGLSLSTQSKSSISDSERDKRQSEALHSLDIASRMSRMRNPLILYHVSLEYAEQRKLDAALYYAKCLLELEAGSDVKGWLLLARILSAQSRFLDAESVVDAALDQTGKWEQGNLLRTKAKLQIAQGHLRSGMETYIQLLALLQIQIRNFGSEKKLNNNDDIQGLEMEIWHDLAFLYISQSKWHDAEACLSKSKAIKLYSASRCHATGLIYEAKGLYKEAQKAYREALDIDPNHVPSLVSSALVLRRCGSGKLNAAGLGYLMDALRHDRMNASAWYHLGLLHKAEGSVSSLIEAMECFQAAHCLEETAPVEPFR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02444 712 ProSiteProfiles TPR repeat profile. 599 632 IPR019734 GO:0005515
Accr5g02444 712 SUPERFAMILY TPR-like 420 539 IPR011990 GO:0005515
Accr5g02444 712 SMART tpr_5 475 508 IPR019734 GO:0005515
Accr5g02444 712 SMART tpr_5 599 632 IPR019734 GO:0005515
Accr5g02444 712 SMART tpr_5 670 706 IPR019734 GO:0005515
Accr5g02444 712 SMART tpr_5 565 598 IPR019734 GO:0005515
Accr5g02444 712 SMART tpr_5 440 473 IPR019734 GO:0005515
Accr5g02444 712 SUPERFAMILY TPR-like 565 685 IPR011990 GO:0005515
Accr5g02444 712 PANTHER PROTEIN NPG1 1 712 IPR043376 -
Accr5g02444 712 Gene3D Tetratricopeptide repeat domain 50 550 IPR011990 GO:0005515
Accr5g02444 712 Gene3D Tetratricopeptide repeat domain 551 709 IPR011990 GO:0005515
Accr5g02444 712 Pfam Tetratricopeptide repeat 602 632 IPR013105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02444 Accr-Chr5 50816738 50820397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02444 1 712 Calmodulin-binding Proteins AT4G28600 52.624 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02444 K21843 - gmx:100800762 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02444 5 50816738 50820397 Accr2g02042 2 55358207 55362922 CCT