Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02428 ATGCAGGGTGATTCTTCTCCGGATTCGATGCTCACGGACTCTAAGGAGGATCATTTGGTCCTTTCTTCTGAGGACTCGTCTTGCCCTCAGGACTCCGAGCTTGAATTGGGTCTTGGCTTGAGCCTCTCTCATCCTCGACTCAAGTCTCAGCCACCTCCTACGACTCAGTTTGCTCGAATTTTGACGGCTATGGATTTTTCTTCATCTGCCTCCTCCTCCTCTTCCTCTCCTAACGTGGCAGCTGGAACCAAGAGAGCTGCTGATTCTCTTGTCGCTGCAAACGGTCCCAGTCAAGTTGTTGGATGGCCTCCTCTTCGAGCATATAGAATGAATAGCTTTAATAATATTCACTCAAAATCTCCAGCCACCGAAGTGAAGAGTAATCAAACAGCTGCAAGGAAGATTACTGACAATGGCAGTGATAAAAACAATAGTACTGCCGAAGAAAAAACACACATCAGGAGATCCTTATTTGTGAAGGTAAATATGGATGGGACACCAATTGGAAGGAAGGTCGATTTGAGTGCTCATAGTTCCTATGAAACCCTGGCACACACTTTGGAGGATATGTTTAATGAACGGAACCCAGTTGTCACCAAAGGATTAAATGGGGAGGATCGAGGTATTGTCATTGGAGCAAAAAAGAGACACTTAAACTTGCTGGATGAATCTTCCAATTTTGTGCTAACTTATGAAGACAAAGAAGGAGACTGGATGCTTGTTGGGGATGTTCCTTGGGACATGTTTCTTAATTCTGTGAGGAGGCTTAGAATTATGAGGAGGTCTGAGGCAAATGGACTTGCGCCAAGATTGGAGGGAAAGAAGAGCAGACTGAGAAGTGAGCGCATGTAG 852 0.4531 MQGDSSPDSMLTDSKEDHLVLSSEDSSCPQDSELELGLGLSLSHPRLKSQPPPTTQFARILTAMDFSSSASSSSSSPNVAAGTKRAADSLVAANGPSQVVGWPPLRAYRMNSFNNIHSKSPATEVKSNQTAARKITDNGSDKNNSTAEEKTHIRRSLFVKVNMDGTPIGRKVDLSAHSSYETLAHTLEDMFNERNPVVTKGLNGEDRGIVIGAKKRHLNLLDESSNFVLTYEDKEGDWMLVGDVPWDMFLNSVRRLRIMRRSEANGLAPRLEGKKSRLRSERM 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02428 283 MobiDBLite consensus disorder prediction 1 37 - -
Accr5g02428 283 MobiDBLite consensus disorder prediction 122 142 - -
Accr5g02428 283 SUPERFAMILY CAD & PB1 domains 151 259 - -
Accr5g02428 283 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 266 IPR003311 GO:0005634|GO:0006355
Accr5g02428 283 Gene3D - 151 273 - -
Accr5g02428 283 ProSiteProfiles PB1 domain profile. 156 263 IPR000270 GO:0005515
Accr5g02428 283 Pfam AUX/IAA family 66 270 IPR033389 -
Accr5g02428 283 MobiDBLite consensus disorder prediction 122 151 - -
Accr5g02428 283 FunFam Auxin-responsive protein 151 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02428 Accr-Chr5 50680482 50683364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02428 160 270 B3 DNA Binding Superfamily AT1G59750 32.432 1.42e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr5g02428 AUX_IAA 7.1e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02428 K14484 - gmx:100779400 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02061 2 55605263 55608145 Accr5g02428 5 50680482 50683364 CCT
Accr5g02428 5 50680482 50683364 Accr5g02428 5 50680482 50683364 ECH