Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02409 ATGGCTACTCAGGGTCGAGTCATTACCTGCAAAGCTGCGGTGGCCTGGGAACCCAGCAAGCCATTGACTATTGAAGACGTTCAGGTGGCCCCACCGCAGGCTGGTGAGGTTCGAGTCAAGATTCTTTACACTGCGCTCTGTCATACCGACGCTTATACTTGGAGCGGCCAGGATCCAGAAGGTCTCTTCCCATGTATTCTTGGTCATGAAGCTGCTGGGGTTGTAGAAAGCGTTGGAGAAGGAGTTACTGAAGTTCAGCCTGGAGATCATGTCATCCCCTGTTACCAGGCTGAATGTAGAGAATGCAAATTTTGCAAATCTGGCAAAACAAACCTTTGTGGCAAAGTCCGTTCCGCCACTGGAGTTGGCGTCATGCTGAGCGACCGCAAGAGTCGTTTCTCTATTAATGGAAAGCCCATCTATCATTTTATGGGAACCTCAACTTTTAGTCAATACACTGTTGTTCATGATGTTAGTGTGGCTAAGATTGATCCAAAAGCTCCTCTAGAGAAAGTTTGTCTTCTTGGATGTGGTGTCCCAACTGGTCTTGGAGCTGTCTGGAACACCGCAAAGGTTGAACCAGGTTCAAATGTAGCTATTTTTGGCCTTGGAACTATTGGGCTTGCTGTTGCAGAGGGCGCAAAAGCTGCTGGTGCATCACGTATTATTGGCATCGACCTTAACAGCAAAAAATTTGATATAGCAAAGAATTTTGGCGTCACTGAATTTATCAATCCAAAAGATCACGAGAAACCAATTCAGCAGGTCATAGTTGATCTCACTGATGGTGGAGTTGATTATAGTTTTGAGTGCATTGGAAATGTCTCAGTGATGAGGTCTGCTTTGGAATGCTGTCATAAGGGCTGGGGCACGTCAATTATTGTGGGTGTTGCTGGATCAGGACAAGAAATATCAACTCGCCCATTCCAGTTAGTGACCGGCCGTGTCTGGAAGGGAACTGCTTTTGGTGGCTTCAAGAGCCGATCACAAGTTCCTATGCTTGTAGACAAGTACATGAAGAAGGAAATCAAGATCGATGAGTACATTACCCACAAGTTAACTCTTGCGGAGATCAACCAAGCATTTGATCTCTTGCATGAAGGGGGGTGCCTCCGATGTGTGCTTGCGGTGGATGTATGA 1140 0.4658 MATQGRVITCKAAVAWEPSKPLTIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGQDPEGLFPCILGHEAAGVVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGVMLSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTIGLAVAEGAKAAGASRIIGIDLNSKKFDIAKNFGVTEFINPKDHEKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSIIVGVAGSGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPMLVDKYMKKEIKIDEYITHKLTLAEINQAFDLLHEGGCLRCVLAVDV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02409 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Accr5g02409 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Accr5g02409 379 PANTHER ALCOHOL DEHYDROGENASE 6 375 - -
Accr5g02409 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Accr5g02409 379 SUPERFAMILY GroES-like 3 193 IPR011032 -
Accr5g02409 379 Gene3D - 182 320 - -
Accr5g02409 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Accr5g02409 379 Pfam Zinc-binding dehydrogenase 206 327 IPR013149 -
Accr5g02409 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Accr5g02409 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Accr5g02409 379 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Accr5g02409 379 Gene3D - 13 372 - -
Accr5g02409 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02409 Accr-Chr5 50228485 50231263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02409 10 331 Monolignol Biosynthesis Gene Families AT1G72680 27.217 5.45e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02409 K00121 - cave:132165797 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02409 5 50228485 50231263 Accr5g02409 5 50228485 50231263 ECH