Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02368 ATGGATCGCGTAGCGTCAGTTAAGCAACAAAGCAGCTTCGAAGACATAGCAAAGTGTCTGATGATGCTGTCTCATCATCATGTCGGAGACAACAACGTTATGAGATCAAACCCTCAAAACGGCGCAGTAGGGTGTGTGGAATACGAGTGCAAAACATGCAAACGCAAATTCTCGTCGTTTCAGGCTCTTGGAGGGCATAGGGCTAGCCACAAGAGACCAAGGCTGGAGGGAGATCGTGACCTGAAAGAGCATGCTAAGTCTCTGAGCTTAGCAACTTGCAAACCTCAAGTTCATGAATGTCCCATTTGTGGTCTAGCGTTCTCGCTGGGCCAGGCACTGGGTGGCCACATGAGAAGACACAGATCAGCCACCCTAAACGACGACGTCGTCCACCATCGTTTCTCTTCCAAAGTGCCAGTTTTGAAGAGATCCAATAGCAAGAGGGTTGAATTCTTGGACCTTAACTTGACCCCTCTTGAGAATGACTTGAAGCTCTTGTTTGGCAGCAAGGCACCCAAGGTTGAAGCCTTCCTCGTCTGA 540 0.4926 MDRVASVKQQSSFEDIAKCLMMLSHHHVGDNNVMRSNPQNGAVGCVEYECKTCKRKFSSFQALGGHRASHKRPRLEGDRDLKEHAKSLSLATCKPQVHECPICGLAFSLGQALGGHMRRHRSATLNDDVVHHRFSSKVPVLKRSNSKRVEFLDLNLTPLENDLKLLFGSKAPKVEAFLV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02368 179 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Accr5g02368 179 Pfam C2H2-type zinc finger 48 73 - -
Accr5g02368 179 Pfam C2H2-type zinc finger 97 122 - -
Accr5g02368 179 Gene3D Classic Zinc Finger 45 120 - -
Accr5g02368 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Accr5g02368 179 SUPERFAMILY beta-beta-alpha zinc fingers 48 120 IPR036236 -
Accr5g02368 179 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Accr5g02368 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Accr5g02368 179 PANTHER ZINC FINGER PROTEIN ZAT5 8 162 - -
Accr5g02368 179 SMART c2h2final6 48 70 IPR013087 -
Accr5g02368 179 SMART c2h2final6 98 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02368 Accr-Chr5 49830038 49830577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02368 8 179 C2H2 Transcription Factor Family AT2G37430 45.109 1.34e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr5g02368 zf-C2H2_6 8.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02368 - - gmx:100527151 191.045