Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02358 ATGGGGAACTCAGTCGGCCATCGCAAACACCGTAACTCCGCTCCTCAGTACCCCACACCTCCCTCCCATATATATGCTCCTCCGCCTCACCTTTCAACCCCAATTTCAGCTCCCCCCTCTCACGACGGCCAATTCCGAGCCGGAATGATCTCTTTACCTTATTCCCACGTCGACTCCACTTTACGTGCTCTCGCCGCCCAAGCTGAAGGCTTTGGTCGATGTGCCATCGGTGGCCTTCATGGTCCCCTTTACCACGTTACTACCTCAGCAGATGATGGACCAGGATCACTCCGTGATGGTTGTCGCAGAAAAGAACCATTGTGGATTGTGTTTGAGGTTTCTGGAACTATTCATCTTTCATCTTACTTGAGTGTGTCTTCTTACAAGACTATTGATGGCCGAGGTCAAAGGATTAAACTCACTGGAAAGGGTTTGCGGCTGAAGGAATGTGAACATGTAATAATTTGCAACTTAGAGCTAGAAGGTGGTAGAGGGCCTGATGTGGATGGCATTCAGATCAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGATTTTGATGATGGACTGATAGATATTACACGAGAAAGCACGGATATTACTATTTCTAGATGTCATTTTTCTCAGCATGACAAAACGATGCTTATTGGGGCAGATCCCTCGCACACTGGTGATAGATGCATGAGGGTGACTATTCACCACTGTTTCTTTGATGGGACACGACAGCGGCATCCTCGTGTTAGATATGCAAAAGTACATCTGTACAATAATTACACCAGAAATTGGGGCATATATGCTGTTTGTGCAAGTGTGGAATCACAGATATTCTCACAACACAACATCTATGAAGCAGGGCAAAAGAAAGTAGCATTTAAGTATCTCTCGGAAAAGGCAGGAGACAAGGAAGCAGAAGCAAGTGGTCACATATGGTCTGAAGGAGACATGTTCATAACTGGAACTCAGGCAGGCTTAATGAGGGAGAGCTTGGGAGTTCCCACATTTCATCCTAGTCAACACTATACGACGTGGACGGTGGCACCTCCTTCACAAGATCTCAAGCAGCTTCTTCAGCACTGCACTGGATGGCAATGTGTCGCACGCCCACCAGATCAACCCCTCCCCGCATAG 1140 0.4746 MGNSVGHRKHRNSAPQYPTPPSHIYAPPPHLSTPISAPPSHDGQFRAGMISLPYSHVDSTLRALAAQAEGFGRCAIGGLHGPLYHVTTSADDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLELEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHTGDRCMRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLSEKAGDKEAEASGHIWSEGDMFITGTQAGLMRESLGVPTFHPSQHYTTWTVAPPSQDLKQLLQHCTGWQCVARPPDQPLPA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02358 379 SMART amb_all 114 292 IPR002022 -
Accr5g02358 379 MobiDBLite consensus disorder prediction 1 42 - -
Accr5g02358 379 Gene3D - 54 362 IPR012334 -
Accr5g02358 379 Pfam Pectate lyase 123 285 IPR002022 -
Accr5g02358 379 SUPERFAMILY Pectin lyase-like 67 369 IPR011050 -
Accr5g02358 379 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Accr5g02358 379 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Accr5g02358 379 PRINTS Pollen allergen Amb family signature 67 84 IPR018082 -
Accr5g02358 379 PANTHER PECTATE LYASE 18-RELATED 56 330 IPR045032 GO:0030570
Accr5g02358 379 MobiDBLite consensus disorder prediction 1 19 - -
Accr5g02358 379 MobiDBLite consensus disorder prediction 20 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02358 Accr-Chr5 49766513 49768946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02358 91 378 Polysaccharide Lyase AT3G55140 75.694 3.80e-168 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02358 K01728 - tcc:18597629 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02358 5 49766513 49768946 Accr5g02358 5 49766513 49768946 ECH