Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02342 ATGGAAGAAAGAGCAACCATCTTAGCTGCAATCTCCACCCTCCCTCCTTCCCAACTCTCTCATCTCTCTCTCTCCCTCCTCTCCGCCACCGACGGCCACCGCCTCCGCCTCTCCTCTGTCCTCTCTTCCCCGTCTCTCTTCTCCTCCACCCTCCGCCACCTCCACTCTCTCTCCCTCCCCGAAAAGTACCTCCTTATCGCTCGCCACCTCCTCTCCTCCCTCCGCCGCATCACCACCCACTTCCTCCTCTCCGACCTCACCACCCTACCTCCGCCGCCCATGTCCACCGCCGCCATTCGTGAGACTGACCTGAACGCCGTTCTCCTCCTCCTCTGTTTCTGCGAAACCCACCAACACCACCCCACAGTCCTCGAGGAGAATTATTCAGATTGGCGGGTCAGCTTATGTAATATTTTCTCTGATAAGTTGTTGACTGCTGCTTTTTCTCCCGTTGGGGCGAGTCCTTGGACGGCCCTGGCTCCTTACGTTGATATGGTGAGTCGGAGCTGGAGACTTGTGAGGGCAAGTTGTGGCGGCGGGAAGAAGGGGGCGTCGCCGGAGACGGTCATGGGACTTCCGGCGGTGGAAGTGAAGGAGGGCGGAAGGGAGTGTGTGATATGTAAGGAGGAGATGAAGGTGGGGAAGGAGGTGTGTGAATTGCCATGTGAGCATTTGTTTCATTGGAGCTGTATATTGCCGTGGCTCAACAACACTGACACGTGTCCTTGCTGTCGGCACCGCTTGCCGTCCGATGATGTCTTCGGAGAGATCCAACGGATCTGGGATATGTTAATTAAATCGAGTGATCGGCAAAGCCTGGTTTAG 825 0.5661 MEERATILAAISTLPPSQLSHLSLSLLSATDGHRLRLSSVLSSPSLFSSTLRHLHSLSLPEKYLLIARHLLSSLRRITTHFLLSDLTTLPPPPMSTAAIRETDLNAVLLLLCFCETHQHHPTVLEENYSDWRVSLCNIFSDKLLTAAFSPVGASPWTALAPYVDMVSRSWRLVRASCGGGKKGASPETVMGLPAVEVKEGGRECVICKEEMKVGKEVCELPCEHLFHWSCILPWLNNTDTCPCCRHRLPSDDVFGEIQRIWDMLIKSSDRQSLV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02342 274 SUPERFAMILY RING/U-box 200 251 - -
Accr5g02342 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 149 249 - -
Accr5g02342 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 251 IPR013083 -
Accr5g02342 274 Pfam Ring finger domain 203 245 IPR001841 -
Accr5g02342 274 ProSiteProfiles Zinc finger RING-type profile. 204 245 IPR001841 -
Accr5g02342 274 SMART ring_2 204 244 IPR001841 -
Accr5g02342 274 CDD RING-H2_PA-TM-RING 203 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02342 Accr-Chr5 49641451 49642275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02342 2 269 C3H Transcription Factor Family AT5G02750 42.561 3.07e-64 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02342 K11982 - pcin:129304395 391.349