Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02333 ATGGGTTGGATTCCATGTTCTGGAAATCCAAACTGTAAGAAAAAGGGAAAGAATAAGATAAAGAAGACGGAAGTGCAGGAGAATACGGTAGATCAAACCAAAACAACTCCAGGGAAGTTGAAGAGGAACTCATCCACTAGTTCCAGAGATCCCTCTAAAAATGGGAATTCTGATCACATTGCAGCCCAGACTTTCACATTCCGTGAGTTGGCGATTGCAACAAAAAATTTTAGGACAGAAAGTCTTTTGGGAGAGGGAGGATTTGGTAGGGTTTACAAGGGGCGTTTGGAAAGTTCTAATCAGGTTGTCGCAATAAAGCAACTTGACCGAGATGGGCTGCAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCACCCTAACCTTGTCAACCTTATTGGTTATTGTGCCGATGGGGATCAAAGGCTTCTAGTTTATGAATACATGCCATTAGGATCCTTGGAAGACCACTTATATGATATTTCTCCTGCCAAAAAACGACTTGACTGGAACACACGAATGAAAATTGCTGCTGGGGCAGCAAAGGGATTGGAATATCTGCATGACAAAGCGAACCCTCCTGTCATATACCGAGATCTCAAGTGTTCAAACATTTTGCTTGGGGAAGGTTATCAACCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGACCTGTTGGCGAAAACACCCATGTATCCACAAGGGTAATGGGCACCTATGGATACTGTGCTCCAGAGTATGCAATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGCATAGTTCTTCTGGAAATAATCACTGGAAGAAAGGCCATTGACAGTTCAAAAGCTGCGGGAGAACAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAAAGATCGAAGAAAATTCTCACAAATGGCTGATCCAATGCTTCAAGGTCAGTACCCGTCCAGAGGCCTATATCAAGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAAGCAAATATGCGGCCAGTTATAGCTGATGTCGTCACTGCCTTGTCTTACCTTGCTTCCCAAAGGTATGACAGCAATTCACACACTCTTCAAAGCCCTCGCCTCGCCCCTGCAACTCCTACAACCAGAAGAGGAAGATGA 1149 0.4378 MGWIPCSGNPNCKKKGKNKIKKTEVQENTVDQTKTTPGKLKRNSSTSSRDPSKNGNSDHIAAQTFTFRELAIATKNFRTESLLGEGGFGRVYKGRLESSNQVVAIKQLDRDGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLYDISPAKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYQPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGIVLLEIITGRKAIDSSKAAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYDSNSHTLQSPRLAPATPTTRRGR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02333 382 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr5g02333 382 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Accr5g02333 382 Gene3D Transferase(Phosphotransferase) domain 1 154 371 - -
Accr5g02333 382 SMART serkin_6 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr5g02333 382 FunFam Serine/threonine-protein kinase PBS1 49 153 - -
Accr5g02333 382 PANTHER OS07G0668900 PROTEIN 25 363 - -
Accr5g02333 382 MobiDBLite consensus disorder prediction 29 59 - -
Accr5g02333 382 Gene3D Phosphorylase Kinase; domain 1 48 153 - -
Accr5g02333 382 CDD STKc_IRAK 83 351 - -
Accr5g02333 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Accr5g02333 382 MobiDBLite consensus disorder prediction 1 59 - -
Accr5g02333 382 Pfam Protein tyrosine and serine/threonine kinase 80 349 IPR001245 GO:0004672|GO:0006468
Accr5g02333 382 FunFam Serine/threonine-protein kinase PBS1 154 369 - -
Accr5g02333 382 SUPERFAMILY Protein kinase-like (PK-like) 58 351 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02333 Accr-Chr5 49587244 49589929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02333 31 356 Glycoside Hydrolase AT3G07070 66.258 4.56e-164 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Accr5g02333 PK_Tyr_Ser-Thr 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02333 - - gmx:100818024 664.455