Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02327 ATGATCTCCAGCAATTCGAATTCTCAATCAATGGCAACCTCGACGCCCACTGACGGGTCTAGCAAGAAGGTGAGAAAGCCATATACTATAACCAAGTCGAGGGAAAGCTGGACCGAGGAAGAGCACGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTCGGTTCAAAAACGGTTATTCAGATTCGAAGCCATGCCCAGAAATACTTCTTAAAAGTTCAGAAGAATGGAACAATTGCACACGTGCCTCCTCCTCGACCTAAGCGCAAAGCTGCTCATCCATACCCACAAAAGGCACCAAAGAATGTTTTGGTTCCATTGCCAGCATCCATAGCATACGTTTCTTCAACAAACACTATTGTTCCTGGGTACGCCACATGGGATGAAACTTCAATGCCGATTAATGCTGGATCAAACAGATGCATACCATGTCAGGAGGACATCACCACCCTTATTGGGAGTGAAGCTGATATTGGATCAAAGGGGATATCAAAAATTAGCAACAGTGGTCTCAGCGGTGTTGGAACCTCAAGTAGAATGCTACAAAGTTCTGAGATGCCGAAGCAAGGGAAACAAGGTCCAGTGCTTTATGGTTTACCAGACTTTGCTGAGGTCTACAGCTTTATTGGAAGTGTATTTGATCCAGATTCCAAAGGACATGTACGGAAGCTCAAGGAGATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTGATGAGAAACCTCACTGTCAATTTATCTAGCCCTGACTTTGAGCCTTTTAAGAAGGTTTTGTCATCGTCTGTTGGGAATACGAAAGTTACCGCAGGAATTGCTGCCAAAAAGGAAACGTCAAACGATCTATCATGTCAACCTGCCTAA 888 0.4302 MISSNSNSQSMATSTPTDGSSKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKAAHPYPQKAPKNVLVPLPASIAYVSSTNTIVPGYATWDETSMPINAGSNRCIPCQEDITTLIGSEADIGSKGISKISNSGLSGVGTSSRMLQSSEMPKQGKQGPVLYGLPDFAEVYSFIGSVFDPDSKGHVRKLKEMDPINFETVLLLMRNLTVNLSSPDFEPFKKVLSSSVGNTKVTAGIAAKKETSNDLSCQPA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02327 295 SMART sant 33 81 IPR001005 -
Accr5g02327 295 Pfam Myb-like DNA-binding domain 34 79 IPR001005 -
Accr5g02327 295 ProSiteProfiles SANT domain profile. 32 85 IPR017884 -
Accr5g02327 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 81 IPR006447 GO:0003677
Accr5g02327 295 CDD SANT 36 79 IPR001005 -
Accr5g02327 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 83 IPR017930 -
Accr5g02327 295 MobiDBLite consensus disorder prediction 1 26 - -
Accr5g02327 295 Gene3D - 37 84 - -
Accr5g02327 295 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Accr5g02327 295 MobiDBLite consensus disorder prediction 1 38 - -
Accr5g02327 295 FunFam protein REVEILLE 6 isoform X1 36 84 - -
Accr5g02327 295 PANTHER SWI/SNF COMPLEX-RELATED 7 256 - -
Accr5g02327 295 ProSiteProfiles Myb-like domain profile. 29 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02327 Accr-Chr5 49533479 49538016 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Accr5g02327 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02327 - - pcin:129305289 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02327 5 49533479 49538016 Accr5g02327 5 49533479 49538016 ECH