Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02309 ATGAGTCATAGGCATTTGTATAGCCCGTCTCAAATGTTTGAGAGTGATCATGACCAAAATTGGAATTCTATGCATACTGATCAACAGTATGTGCACCTTGGTAGAGCTAGCACTTCAGAGAATGGTTCTTTCGTTTATCCTATGGAAAATATGTCTATAGATGGCATTTCTTTTGCCTCTAATTGGAATCCTACCACAACGCCAAATGTATTTGCATCCTCAAGTCTCAATATTGAAGTACCACCTCATCAATCTGATGCATCAGGCACTTCTCATGATCATTTTCTGCATTCATCAAGTGCCGCGGCCTTCTTTACAGTTTCTGAAAATTATGCTCTTCAGCCTCCTCCTCCTCCCAATTATGATAGACAGCCATTTCACGTTGTTGATGGGGGTTTTATTGATCTTACAATGGGAAGTGGAAGAGGGCCTCACAAGCGGAAGAGCCCAGGAAATCCTTCAGTCTGTGAGAGAGGTAGTACGAGCAGATACATAAATGCTGGAAGTTCAACTGATCTTCCAATGTCTTCAGAACTACAGCAGGAGAAGCCAAATATGGATTGTCAGTATTTGCCTCGGGATCAAGTTACCATGCCACTCACCTTCAGAGGTAGTGGCCTTTCAATCAGGGGGGAGGGTTCCTTGAGAAATGTGAGAAGCCGTTCTACACTTGATTTTGAATCCAACTTGGCTAGGACCCATTTATCTGGCAGTCATTCACACAACTACTCCGCTGGTCTACCCATTGACCATTCTAGCACAATGGACCCATCAGGTCAGAGTTCTAGCGGATTAACACGGGATTGGAGCCAAATGAGCACATCTCATGCTCATGGCAGGGTGCTATTACCAGATACAAGTGCTCTTAATTGTGAGACAAGTCACTTCCTTGTTGGAAGTAGCACTAGTAATACCCCTGTAGATGTTGGGGGTTACCATCACGAATTTGGTACAAGCAGAAATCCTATTGCACCTCAAAGTTTTCATAATAATCTGACTCAGACTGCTAGGGGAGTGCGAAGCAACTTTTCACATAGGTCTACTCCACCTTTTAGACCTTCTTCAGGCTTGCGCTTGGGACATGTAGCTCCATCGGATGATGGATTGCAAACAGTTGCCGATAGTTACTCCTCAAGACATCCCAGGCCACTGACAGCAACTGGCTGGCGGAACAGTGATAGAAATGGAAGGTCAAGGATATCTAGTGATAGATATCGACCACTTGCTGATGCATCTGGTCCCCACAACCGATTTTCTTCAGAGGGTTTCATGATTGTAGATCGTGGGTTGCCATATGGATCTAGAAGTATGGTTGATCAGCATAGGGACATGAGGATGGACATTGACAACATGAGCTATGAGGAACTACTTGCCCTTGGAGAGAGGATTGGTCATGTCAGCACAGGATTGTCTGAGGACTTGATTTCAAAATGCATGACGGAAACAATATATTGTTCATCTGAGCAAATTCAGGAGGAAGGAACTTGTGTAATCTGTTTGGAAGAATACAAGGACATGGATGATGTTGGGACGCTGAAAACTTGCCGTCACGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCCATGAAGAACAAATGTCCAATCTGCAAAGCTCCTGCTCTGCCAGATGATAAGAAGGATAAATAA 1650 0.4406 MSHRHLYSPSQMFESDHDQNWNSMHTDQQYVHLGRASTSENGSFVYPMENMSIDGISFASNWNPTTTPNVFASSSLNIEVPPHQSDASGTSHDHFLHSSSAAAFFTVSENYALQPPPPPNYDRQPFHVVDGGFIDLTMGSGRGPHKRKSPGNPSVCERGSTSRYINAGSSTDLPMSSELQQEKPNMDCQYLPRDQVTMPLTFRGSGLSIRGEGSLRNVRSRSTLDFESNLARTHLSGSHSHNYSAGLPIDHSSTMDPSGQSSSGLTRDWSQMSTSHAHGRVLLPDTSALNCETSHFLVGSSTSNTPVDVGGYHHEFGTSRNPIAPQSFHNNLTQTARGVRSNFSHRSTPPFRPSSGLRLGHVAPSDDGLQTVADSYSSRHPRPLTATGWRNSDRNGRSRISSDRYRPLADASGPHNRFSSEGFMIVDRGLPYGSRSMVDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKCMTETIYCSSEQIQEEGTCVICLEEYKDMDDVGTLKTCRHDYHVSCIRKWLSMKNKCPICKAPALPDDKKDK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02309 549 CDD RING-H2_RNF24-like 494 541 - -
Accr5g02309 549 MobiDBLite consensus disorder prediction 370 413 - -
Accr5g02309 549 MobiDBLite consensus disorder prediction 340 359 - -
Accr5g02309 549 MobiDBLite consensus disorder prediction 370 395 - -
Accr5g02309 549 Pfam Ring finger domain 495 538 IPR001841 -
Accr5g02309 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 123 542 IPR045191 GO:0061630
Accr5g02309 549 MobiDBLite consensus disorder prediction 140 159 - -
Accr5g02309 549 SMART ring_2 496 537 IPR001841 -
Accr5g02309 549 MobiDBLite consensus disorder prediction 235 268 - -
Accr5g02309 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 542 IPR013083 -
Accr5g02309 549 ProSiteProfiles Zinc finger RING-type profile. 496 538 IPR001841 -
Accr5g02309 549 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 461 542 - -
Accr5g02309 549 SUPERFAMILY RING/U-box 484 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02309 Accr-Chr5 49338229 49340651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02309 1 548 C3H Transcription Factor Family AT2G37150 42.629 2.98e-109 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02309 - - gmx:100803627 812.372