Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02307 ATGATGTCTGGTGACCCTTTCTCCTTATCCACTTCCATCGGAGGCTTTCCTCCCCAACAAAACCCAAACCCAAACCCAAACCCTAAACCTAATCCCAAGAAGAAAAGGAATCTCCCAGGAACACCAGATCCAGATGCGGAGGTCATCGCGCTGTCACCGAAAACACTCATGACAACCAACAGGTTCATTTGCGAGATATGCAACAAAGGGTTTCAGAGAGACCAGAACCTTCAGCTTCACAGGAGGGGTCACAACCTGCCATGGAAGTTACGACAAAGGTCCAACAAAGAAGTTCGAAAGAAGGTTTACATATGCCCGGAGAAGACGTGCGTCCACCACGACCCCTCCAGAGCACTCGGCGACCTCACCGGCATCAAGAAGCACTTTAGCAGAAAACACGGCGAGAAGAAATGGAAGTGTGACAAGTGTTCCAAGAAATACGCAGTCCAATCTGACTGGAAAGCTCACACCAAGACCTGTGGTACAAGAGAATACAAGTGCGATTGTGGCAACCTATTTTCCAGAAAAGACAGCTTCATTACACACAGAGCTTTCTGTGACGCCTTAGCGGAAGAGAGTGCCAGGCTCACCTCGGTTGCTCCAACAAATCTGAACTTCAAGAACGAAGGGAATAATAATGCCATGAGCTCAGCACAACCTAGTCAGCTGGGTGAAAACAACGCAGACGTAATTTCTCAATTCGGCTCGCATGGATTTCGTGCAGATTTTAATGCAAGCCTATCAATGTGGTTGAACCAAGGAAATAATCATAATAATAATAATGGTCTGGACGTTGGGGGGCTATACGGTTCTTCAGGTTTGAGTAGTGAGCATATGGCACAAATGACGACCCAAGCTAGTAATAATGCTTTTGGGTCTTGTAATTTTGGAATGCCTGCTTCGAATTCAACAACAAACGCAGGTCTGTTACTGTCAAGTGGGAAGAGGGGTGAAGCAATATCAAAGCCTTCTTCTCCCATGTCAGCAACAGCTTTACTTCAGAAGGCAGCTCAGATGGGTTCCACCAGAAGCAGCAACAACAACAACAATCCCTCTATTTTCAGTGGCACTTTGGGAGTTATGTCGTCTTCTTCTAATTCCCACACGACCACTAATCTCAATGATAACAGCACCAGCACCAACAATCCCCAGAATTTTGGTTCAACTAGCAGTGCTGAACCAATTCTAGCAGATAACAACTTTAGTACTCATAATCTCGACCAGCTCTTGATGCAGACCAGTGCAAAGCAAAGTGAACAACAAGTGCAATTGAAGCTTTACCCAGGTGGTTCTTCATCAGAACATAGTTTGACGAGAGATTTTCTCGGCATGGGTGGTGGCGGTAGTGCCGCCGGGCCTCCTCCTCCGTTTTTGCCGCAAGAACTGGCAAAGTTTGCGTCCATTGGGTCACCCATGGGTTTAACCCAATTTACTGCAAACCATTGA 1446 0.4661 MMSGDPFSLSTSIGGFPPQQNPNPNPNPKPNPKKKRNLPGTPDPDAEVIALSPKTLMTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALAEESARLTSVAPTNLNFKNEGNNNAMSSAQPSQLGENNADVISQFGSHGFRADFNASLSMWLNQGNNHNNNNGLDVGGLYGSSGLSSEHMAQMTTQASNNAFGSCNFGMPASNSTTNAGLLLSSGKRGEAISKPSSPMSATALLQKAAQMGSTRSSNNNNNPSIFSGTLGVMSSSSNSHTTTNLNDNSTSTNNPQNFGSTSSAEPILADNNFSTHNLDQLLMQTSAKQSEQQVQLKLYPGGSSSEHSLTRDFLGMGGGGSAAGPPPPFLPQELAKFASIGSPMGLTQFTANH 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02307 481 MobiDBLite consensus disorder prediction 1 47 - -
Accr5g02307 481 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Accr5g02307 481 MobiDBLite consensus disorder prediction 337 396 - -
Accr5g02307 481 FunFam protein indeterminate-domain 12-like 41 109 - -
Accr5g02307 481 Gene3D Classic Zinc Finger 40 113 - -
Accr5g02307 481 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Accr5g02307 481 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Accr5g02307 481 Gene3D Classic Zinc Finger 114 195 - -
Accr5g02307 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 451 IPR031140 -
Accr5g02307 481 Pfam Zinc-finger double-stranded RNA-binding 62 84 IPR022755 -
Accr5g02307 481 MobiDBLite consensus disorder prediction 19 35 - -
Accr5g02307 481 MobiDBLite consensus disorder prediction 1 18 - -
Accr5g02307 481 SMART c2h2final6 138 158 IPR013087 -
Accr5g02307 481 SMART c2h2final6 103 133 IPR013087 -
Accr5g02307 481 SMART c2h2final6 62 84 IPR013087 -
Accr5g02307 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02307 Accr-Chr5 49305724 49307490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02307 1 469 IDZ Gene Family AT5G03150 46.970 2.14e-126 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr5g02307 zf-C2H2_jaz 7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02307 K25870 - gmx:100801182 531.561