Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr5g02303 | ATGGGTAACATAGGAAGTAGTGGTGGTAACGACAACCGCCGCAGGCACAACGCGAGTGGCAGGAGGAGTCATCCGCCTCCCCCTCCGCCGGTGACCCCACAGCCGGAAATCACCGTCAATCGATTTGTCCATCCCGGTGGTCCACCTTATCCACCACAATTCTCAAATTCGAATCCTCCGCCGTACCAGTACCCGGGTTTCTATCCCCCACCGCCGACGACCATGCCGCTTCCTCTGCCACCTCCTTTTGATCAGCATCATCGTATGGTTTCTCATTCACATGTGGACCCAGTATGGATGGGCGGACGTTACCCTTATGGCCCTGTGATGCTTCCTCCTCCGCCCTATGTGGAGCATCAGAAGGCGGTTACGATAAGGAACGATGTTAATATCAAGAAGGAAACTCTGAGGATTGAGCCCGATGAGGAAAATCCGGGGCGGTTCCTTGTGGCATTCACATTTGACGCCACTGTGGCCGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGGTGATGGATGCATTCTTACGCCAACAAAGGAAAACCTTCTAGCACCTGTAACTGTGCATTTCGAGCAGGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGTGAAGGCAGATGCATCCTCTGATAATCATGAAGGATCCAATGAAACTCTTACACCTGGTGGCACAAACTCTCAGATTACTCAAACAGTCTTTGAGAAAGAGAAAGGAGAGTTCCGGGTGAGGGTAGTTAAGCAGATCCTGTGGGTGAATGGAATGAGATATGAGTTGCAGGAGATATATGGTATTGGTAACTCAGTGGAGAATGATTTGGATGGAAATGACCCAGGAAAAGAGTGTGTCATCTGCTTATCAGAGCCTCGGGATACAACTGTTCTTCCCTGTCGCCACATGTGCATGTGTAGCGGATGTGCGAAGGTTCTGAGGTTCCAGACAAACAGGTGCCCAATTTGCAGACAGCCAGTTGAGAGGCTTTTGGAGATAAAAGTCAACAACGGGCCAGAAGATGCAGCAACACAGGTGTGTCAAGATTCCTGTACAGTGTAG | 1059 | 0.5024 | MGNIGSSGGNDNRRRHNASGRRSHPPPPPPVTPQPEITVNRFVHPGGPPYPPQFSNSNPPPYQYPGFYPPPPTTMPLPLPPPFDQHHRMVSHSHVDPVWMGGRYPYGPVMLPPPPYVEHQKAVTIRNDVNIKKETLRIEPDEENPGRFLVAFTFDATVAGSITILFFAKEGDGCILTPTKENLLAPVTVHFEQGLGQKFRQPAGTVKADASSDNHEGSNETLTPGGTNSQITQTVFEKEKGEFRVRVVKQILWVNGMRYELQEIYGIGNSVENDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNNGPEDAATQVCQDSCTV | 352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr5g02303 | 352 | MobiDBLite | consensus disorder prediction | 45 | 60 | - | - | |
| Accr5g02303 | 352 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 268 | 333 | - | - | |
| Accr5g02303 | 352 | MobiDBLite | consensus disorder prediction | 202 | 228 | - | - | |
| Accr5g02303 | 352 | SUPERFAMILY | RING/U-box | 283 | 329 | - | - | |
| Accr5g02303 | 352 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 268 | 333 | IPR013083 | - | |
| Accr5g02303 | 352 | ProSiteProfiles | Zinc finger RING-type profile. | 284 | 323 | IPR001841 | - | |
| Accr5g02303 | 352 | PANTHER | MAHOGUNIN | 1 | 336 | IPR045194 | GO:0061630 | |
| Accr5g02303 | 352 | SMART | ring_2 | 284 | 322 | IPR001841 | - | |
| Accr5g02303 | 352 | MobiDBLite | consensus disorder prediction | 207 | 228 | - | - | |
| Accr5g02303 | 352 | Pfam | Zinc finger, C3HC4 type (RING finger) | 282 | 328 | - | - | |
| Accr5g02303 | 352 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Accr5g02303 | 352 | CDD | mRING-HC-C3HC5_MGRN1-like | 282 | 323 | IPR045195 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr5g02303 | Accr-Chr5 | 49263032 | 49265682 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr5g02303 | 97 | 303 | C3H Transcription Factor Family | AT3G09770 | 60.338 | 2.66e-89 | 270 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr5g02303 | - | - | cmax:111482503 | 467.233 |