Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02293 ATGTCTTCCTCTGCCGCTTCATTAGCCCTCCCCACATTCACTTCAAGGTTCCGGTCACTATGCTTGGCCAGTCAAGCCTTGTTCCCTCCCATTTCTGAATCTTACTCGTCTCTCAGATTAAAATCCAAGCCCCTTTCTTTGTCTGCCTCTTTTCTTCGATTTCCTACACCTTGTTCCTCTCGTTTTATCCCCAATGTTGCTCTTTCTTCTGAGTTCGAACAAGATGAGCTTGTTCCTGATGAAGACGAGCCTCGCTACTCCCCCGACCTCAAACTCTTCGTTGGTAATCTTCCCTTCAACGTTGACAGTGCCCAACTTGCTGAGTTGTTCGAGAGCGCTGGAAGTGTCGAGATGGTTGAGGTAATTTATGATAAAATGACCGGAAGAAGCAGGGGATTTGGTTTTGTGACCATGTCCACCTCTGAGGAAGTCGAAGCAGCCGCTCAACAATTCAATGGCTATGAACTTGATGGGCGGGCATTGAGAGTAAATTTTGGACCTCCTCCTCCTCGTAAGGAGAATGCCCCTTTCAGAGGTTCCAGAGTTGGTTCTTCTTCAGATACCGGAAACCGTGTTCATGTAGGTAATCTTGCATGGGGTGTTGATAACTTGGCGCTTGAGAATCTGTTTGCTGAGCAGGGAAAGGTTTTGGAAGCCAAGGTAATTTATGACAGAGAGAGTGGAAGGTCAAGAGGATTTGGATTTGTGACTTACAGCACTGCTGAAGAGGTCGACAGTGCTATTGAGTCCTTAGATGGTGTGGACTTGAATGGCAGAGCTATCCGAGTATCATTGGCAGATGCTAAGCCAAGGCGTTCATTTTGA 825 0.4703 MSSSAASLALPTFTSRFRSLCLASQALFPPISESYSSLRLKSKPLSLSASFLRFPTPCSSRFIPNVALSSEFEQDELVPDEDEPRYSPDLKLFVGNLPFNVDSAQLAELFESAGSVEMVEVIYDKMTGRSRGFGFVTMSTSEEVEAAAQQFNGYELDGRALRVNFGPPPPRKENAPFRGSRVGSSSDTGNRVHVGNLAWGVDNLALENLFAEQGKVLEAKVIYDRESGRSRGFGFVTYSTAEEVDSAIESLDGVDLNGRAIRVSLADAKPRRSF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02293 274 FunFam Ribonucleoprotein A, chloroplastic 68 186 - -
Accr5g02293 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 162 IPR000504 GO:0003723
Accr5g02293 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Accr5g02293 274 CDD RRM2_NsCP33_like 191 266 - -
Accr5g02293 274 SUPERFAMILY RNA-binding domain, RBD 186 272 IPR035979 GO:0003676
Accr5g02293 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 268 IPR000504 GO:0003723
Accr5g02293 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Accr5g02293 274 Gene3D - 69 184 IPR012677 -
Accr5g02293 274 Gene3D - 185 274 IPR012677 -
Accr5g02293 274 FunFam 28 kDa ribonucleoprotein, chloroplastic 187 272 - -
Accr5g02293 274 MobiDBLite consensus disorder prediction 167 187 - -
Accr5g02293 274 PANTHER OS02G0815200 PROTEIN 47 272 - -
Accr5g02293 274 SUPERFAMILY RNA-binding domain, RBD 84 189 IPR035979 GO:0003676
Accr5g02293 274 SMART rrm1_1 191 264 IPR000504 GO:0003723
Accr5g02293 274 SMART rrm1_1 91 164 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02293 Accr-Chr5 49183915 49185694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02293 192 273 Eukaryotic Initiation Factors Gene Family AT1G49760 36.905 3.96e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02293 - - cave:132192120 363.999