Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02285 ATGGCTGACCAGGCTGGATCATCTGATACTAAGGGAGCGAAGAAGGACTTTAGCACGGCGATTCTGGAGCGCAAGAAGGCGCCAAATCGGTTGGTTGTTGATGAGGCTATCAACGATGACAATTCTGTGGTCGCAATCCACCCGGCGACCTTGGAAAAACTACAGATGTTTCGCGGTGACACGATTTTGATCAAGGGAAAGAAAAGAAGAGATACAATCTGCATTGTACTCGCTGATGACACGTGTGAAGAACCAAGGATAAGAATGAATAAGGTTGTGAGAAGCAACCTGAGGGTTAGGCTCGGTGATGTTGTTTCTGTGCATCACTGTGCTGATGTTAAATACGGCAAGCGAGTACACATTCTTCCTATCGATGACACTATCGAAGGGGTAACTGGAAGTCTCTTTGATGCATACTTAAAACCTTATTTTCTGGAGGCTTATCGCCCAGTGAGGAAGGGTGACTTATTCCTTGTCAGAGGGGGAATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGACCCTCCAGAGTATTGCGTTGTTGCGCCAGACACTGAGGTCTTTTGTGAAGGGGAGCCTGTGAACAGGGAAGATATGGATCGATTGGATGACGTTGGTTATGATGATGTTGGTGGTGTAAGAAAGCAGATGGCCCAGATTAGGGAATTGGTGGAATTGCCACTGAGGCATCCACAATTATTCAAGTCTATTGGTGTTAAGCCACCAAAAGGTATTTTGCTGTATGGGCCTCCTGGGTCTGGTAAGACTTTAATTGCCCGGGCAGTTGCAAATGAAACTGGTGCCTTCTTTTTCTGCATTAATGGACCTGAGATCATGTCAAAATTGGCTGGTGAAAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCACCGTCTATCATCTTCATTGATGAGATAGATTCTATAGCTCCAAAGCGGGAGAAGACTCATGGAGAAGTTGAGAGGAGGATTGTATCCCAGCTTTTGACGCTCATGGATGGGCTAAAAGCACGTGCACATGTAATTGTTATTGGAGCCACAAATCGTCCCAACAGCATTGACCCAGCTCTTAGGAGGTTTGGAAGGTTTGACCGGGAGATAGATATTGGTGTTCCTGATGAAGTTGGCCGTCTTGAGGTGCTACGTATCCACACAAAGAATATGAAGCTTTCTGAAGATGTTGATTTGGAAAAAATTTCAAAGAATACCCATGGCTATGTTGGTGCTGATCTTGCTGCTCTCTGCACTGAAGCTGCCCTTCAATGCATCAGAGAGAAAATGGACGTGATTGACTTGGAAGATGATACAATTGATGCTGAGATACTGAACTCAATGGCTGTGACAAATGATCATTTCCAGACTGCTCTTGGATCAAGCAACCCTTCTGCCCTCCGTGAAACGGTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGCCTTGAGAATGTTAAGAGAGAGCTGCAAGAGACCGTTCAATATCCCGTGGAACACCCTGAAAAATTCGAGAAGTTTGGAATGTCCCCATCCAAGGGGGTTCTTTTCTATGGGCCTCCTGGATGTGGCAAGACGCTTTTGGCTAAAGCTATTGCTAATGAATGCCAGGCAAACTTCATCAGTATTAAGGGCCCTGAGCTTCTTACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGCGGGAAATATTTGACAAGGCCCGTGGTTCTGCTCCATGTGTCTTGTTCTTTGATGAACTCGACTCAATTGCAACCCAGAGAGGTAGCAGTGTCGGAGATGCTGGGGGTGCTGCAGACAGGGTTTTGAATCAACTCCTTACAGAAATGGATGGCATGTCAGCTAAGAAAACTGTGTTCATCATCGGGGCCACCAATCGACCGGACATCATAGACCCTGCACTTCTGCGACCTGGTCGTCTAGACCAGTTGATTTATATCCCCCTCCCAGATGAGGAATCCCGCTATCAGATATTTAAATCTTGCCTTAGAAAATCCCCTGTGGCAAAGGATGTTGATCTTGGAGCTCTTGCCAAGTATACTCAGGGCTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCCATAAGAGAGAACATTGAAAAGGACATTGAAAGAGAACGGAGGAGAAGTGAGAATGCTGAGTTGATGGAGGAAGATGAGGTAGCAGAAATTAAGGCTGCTCATTTCGAGGAATCCATGAAGTATGCTCGAAGGAGTGTAAGTGATGCTGACATTCGCAAGTACCAGGCATTTGCCCAGACATTACAGCAATCCAGAGGATTCGGAACAGAGTTCAGGTTCCCGGATAGCACCTCTGCCGGCGCCGCCACTGCCTCAGCCGACCCTTTTGCGCCTGCTGGGGGTGCTGATGAGGATGATCTTTACAGTTAG 2415 0.4642 MADQAGSSDTKGAKKDFSTAILERKKAPNRLVVDEAINDDNSVVAIHPATLEKLQMFRGDTILIKGKKRRDTICIVLADDTCEEPRIRMNKVVRSNLRVRLGDVVSVHHCADVKYGKRVHILPIDDTIEGVTGSLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEVFCEGEPVNREDMDRLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLEKISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDDTIDAEILNSMAVTNDHFQTALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLGALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENAELMEEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPDSTSAGAATASADPFAPAGGADEDDLYS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02285 804 SMART CDC48_N_2 30 113 IPR003338 -
Accr5g02285 804 MobiDBLite consensus disorder prediction 770 804 - -
Accr5g02285 804 SMART CDC48_2_2 130 196 IPR004201 -
Accr5g02285 804 Gene3D - 468 651 IPR027417 -
Accr5g02285 804 Gene3D - 376 467 - -
Accr5g02285 804 CDD RecA-like_CDC48_r2-like 489 649 - -
Accr5g02285 804 Gene3D - 113 209 - -
Accr5g02285 804 SMART AAA_5 241 377 IPR003593 GO:0016887
Accr5g02285 804 SMART AAA_5 514 653 IPR003593 GO:0016887
Accr5g02285 804 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Accr5g02285 804 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Accr5g02285 804 Gene3D - 210 374 IPR027417 -
Accr5g02285 804 Pfam AAA+ lid domain 673 714 IPR041569 -
Accr5g02285 804 Pfam AAA+ lid domain 397 438 IPR041569 -
Accr5g02285 804 Pfam ATPase family associated with various cellular activities (AAA) 518 651 IPR003959 GO:0005524|GO:0016887
Accr5g02285 804 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Accr5g02285 804 FunFam Transitional endoplasmic reticulum ATPase 206 374 - -
Accr5g02285 804 Gene3D - 655 760 - -
Accr5g02285 804 CDD RecA-like_CDC48_r1-like 209 374 - -
Accr5g02285 804 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Accr5g02285 804 PANTHER AAA-FAMILY ATPASE 400 766 - -
Accr5g02285 804 Coils Coil 704 724 - -
Accr5g02285 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Accr5g02285 804 SUPERFAMILY ADC-like 27 110 IPR009010 -
Accr5g02285 804 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Accr5g02285 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 761 IPR027417 -
Accr5g02285 804 FunFam Transitional endoplasmic reticulum ATPase 468 651 - -
Accr5g02285 804 FunFam Cell division control 48 376 467 - -
Accr5g02285 804 FunFam Transitional endoplasmic reticulum ATPase 7 112 - -
Accr5g02285 804 Pfam Cell division protein 48 (CDC48), domain 2 132 194 IPR004201 -
Accr5g02285 804 FunFam Cell division control 48 113 209 - -
Accr5g02285 804 Gene3D - 7 112 - -
Accr5g02285 804 MobiDBLite consensus disorder prediction 770 785 - -
Accr5g02285 804 NCBIfam CDC48 family AAA ATPase 31 764 IPR005938 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02285 Accr-Chr5 49089456 49093129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02285 199 774 Calmodulin-binding Proteins AT3G56690 36.883 4.49e-129 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02285 K13525 - gmx:100791603 1483.39