Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr5g02285 | ATGGCTGACCAGGCTGGATCATCTGATACTAAGGGAGCGAAGAAGGACTTTAGCACGGCGATTCTGGAGCGCAAGAAGGCGCCAAATCGGTTGGTTGTTGATGAGGCTATCAACGATGACAATTCTGTGGTCGCAATCCACCCGGCGACCTTGGAAAAACTACAGATGTTTCGCGGTGACACGATTTTGATCAAGGGAAAGAAAAGAAGAGATACAATCTGCATTGTACTCGCTGATGACACGTGTGAAGAACCAAGGATAAGAATGAATAAGGTTGTGAGAAGCAACCTGAGGGTTAGGCTCGGTGATGTTGTTTCTGTGCATCACTGTGCTGATGTTAAATACGGCAAGCGAGTACACATTCTTCCTATCGATGACACTATCGAAGGGGTAACTGGAAGTCTCTTTGATGCATACTTAAAACCTTATTTTCTGGAGGCTTATCGCCCAGTGAGGAAGGGTGACTTATTCCTTGTCAGAGGGGGAATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGACCCTCCAGAGTATTGCGTTGTTGCGCCAGACACTGAGGTCTTTTGTGAAGGGGAGCCTGTGAACAGGGAAGATATGGATCGATTGGATGACGTTGGTTATGATGATGTTGGTGGTGTAAGAAAGCAGATGGCCCAGATTAGGGAATTGGTGGAATTGCCACTGAGGCATCCACAATTATTCAAGTCTATTGGTGTTAAGCCACCAAAAGGTATTTTGCTGTATGGGCCTCCTGGGTCTGGTAAGACTTTAATTGCCCGGGCAGTTGCAAATGAAACTGGTGCCTTCTTTTTCTGCATTAATGGACCTGAGATCATGTCAAAATTGGCTGGTGAAAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCACCGTCTATCATCTTCATTGATGAGATAGATTCTATAGCTCCAAAGCGGGAGAAGACTCATGGAGAAGTTGAGAGGAGGATTGTATCCCAGCTTTTGACGCTCATGGATGGGCTAAAAGCACGTGCACATGTAATTGTTATTGGAGCCACAAATCGTCCCAACAGCATTGACCCAGCTCTTAGGAGGTTTGGAAGGTTTGACCGGGAGATAGATATTGGTGTTCCTGATGAAGTTGGCCGTCTTGAGGTGCTACGTATCCACACAAAGAATATGAAGCTTTCTGAAGATGTTGATTTGGAAAAAATTTCAAAGAATACCCATGGCTATGTTGGTGCTGATCTTGCTGCTCTCTGCACTGAAGCTGCCCTTCAATGCATCAGAGAGAAAATGGACGTGATTGACTTGGAAGATGATACAATTGATGCTGAGATACTGAACTCAATGGCTGTGACAAATGATCATTTCCAGACTGCTCTTGGATCAAGCAACCCTTCTGCCCTCCGTGAAACGGTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGCCTTGAGAATGTTAAGAGAGAGCTGCAAGAGACCGTTCAATATCCCGTGGAACACCCTGAAAAATTCGAGAAGTTTGGAATGTCCCCATCCAAGGGGGTTCTTTTCTATGGGCCTCCTGGATGTGGCAAGACGCTTTTGGCTAAAGCTATTGCTAATGAATGCCAGGCAAACTTCATCAGTATTAAGGGCCCTGAGCTTCTTACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGCGGGAAATATTTGACAAGGCCCGTGGTTCTGCTCCATGTGTCTTGTTCTTTGATGAACTCGACTCAATTGCAACCCAGAGAGGTAGCAGTGTCGGAGATGCTGGGGGTGCTGCAGACAGGGTTTTGAATCAACTCCTTACAGAAATGGATGGCATGTCAGCTAAGAAAACTGTGTTCATCATCGGGGCCACCAATCGACCGGACATCATAGACCCTGCACTTCTGCGACCTGGTCGTCTAGACCAGTTGATTTATATCCCCCTCCCAGATGAGGAATCCCGCTATCAGATATTTAAATCTTGCCTTAGAAAATCCCCTGTGGCAAAGGATGTTGATCTTGGAGCTCTTGCCAAGTATACTCAGGGCTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCCATAAGAGAGAACATTGAAAAGGACATTGAAAGAGAACGGAGGAGAAGTGAGAATGCTGAGTTGATGGAGGAAGATGAGGTAGCAGAAATTAAGGCTGCTCATTTCGAGGAATCCATGAAGTATGCTCGAAGGAGTGTAAGTGATGCTGACATTCGCAAGTACCAGGCATTTGCCCAGACATTACAGCAATCCAGAGGATTCGGAACAGAGTTCAGGTTCCCGGATAGCACCTCTGCCGGCGCCGCCACTGCCTCAGCCGACCCTTTTGCGCCTGCTGGGGGTGCTGATGAGGATGATCTTTACAGTTAG | 2415 | 0.4642 | MADQAGSSDTKGAKKDFSTAILERKKAPNRLVVDEAINDDNSVVAIHPATLEKLQMFRGDTILIKGKKRRDTICIVLADDTCEEPRIRMNKVVRSNLRVRLGDVVSVHHCADVKYGKRVHILPIDDTIEGVTGSLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEVFCEGEPVNREDMDRLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLEKISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDDTIDAEILNSMAVTNDHFQTALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLGALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENAELMEEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPDSTSAGAATASADPFAPAGGADEDDLYS | 804 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr5g02285 | 804 | SMART | CDC48_N_2 | 30 | 113 | IPR003338 | - | |
Accr5g02285 | 804 | MobiDBLite | consensus disorder prediction | 770 | 804 | - | - | |
Accr5g02285 | 804 | SMART | CDC48_2_2 | 130 | 196 | IPR004201 | - | |
Accr5g02285 | 804 | Gene3D | - | 468 | 651 | IPR027417 | - | |
Accr5g02285 | 804 | Gene3D | - | 376 | 467 | - | - | |
Accr5g02285 | 804 | CDD | RecA-like_CDC48_r2-like | 489 | 649 | - | - | |
Accr5g02285 | 804 | Gene3D | - | 113 | 209 | - | - | |
Accr5g02285 | 804 | SMART | AAA_5 | 241 | 377 | IPR003593 | GO:0016887 | |
Accr5g02285 | 804 | SMART | AAA_5 | 514 | 653 | IPR003593 | GO:0016887 | |
Accr5g02285 | 804 | Pfam | Cell division protein 48 (CDC48), N-terminal domain | 30 | 111 | IPR003338 | - | |
Accr5g02285 | 804 | ProSitePatterns | AAA-protein family signature. | 621 | 639 | IPR003960 | GO:0005524|GO:0016887 | |
Accr5g02285 | 804 | Gene3D | - | 210 | 374 | IPR027417 | - | |
Accr5g02285 | 804 | Pfam | AAA+ lid domain | 673 | 714 | IPR041569 | - | |
Accr5g02285 | 804 | Pfam | AAA+ lid domain | 397 | 438 | IPR041569 | - | |
Accr5g02285 | 804 | Pfam | ATPase family associated with various cellular activities (AAA) | 518 | 651 | IPR003959 | GO:0005524|GO:0016887 | |
Accr5g02285 | 804 | Pfam | ATPase family associated with various cellular activities (AAA) | 245 | 374 | IPR003959 | GO:0005524|GO:0016887 | |
Accr5g02285 | 804 | FunFam | Transitional endoplasmic reticulum ATPase | 206 | 374 | - | - | |
Accr5g02285 | 804 | Gene3D | - | 655 | 760 | - | - | |
Accr5g02285 | 804 | CDD | RecA-like_CDC48_r1-like | 209 | 374 | - | - | |
Accr5g02285 | 804 | ProSitePatterns | AAA-protein family signature. | 345 | 363 | IPR003960 | GO:0005524|GO:0016887 | |
Accr5g02285 | 804 | PANTHER | AAA-FAMILY ATPASE | 400 | 766 | - | - | |
Accr5g02285 | 804 | Coils | Coil | 704 | 724 | - | - | |
Accr5g02285 | 804 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 204 | 466 | IPR027417 | - | |
Accr5g02285 | 804 | SUPERFAMILY | ADC-like | 27 | 110 | IPR009010 | - | |
Accr5g02285 | 804 | SUPERFAMILY | Cdc48 domain 2-like | 112 | 204 | IPR029067 | - | |
Accr5g02285 | 804 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 476 | 761 | IPR027417 | - | |
Accr5g02285 | 804 | FunFam | Transitional endoplasmic reticulum ATPase | 468 | 651 | - | - | |
Accr5g02285 | 804 | FunFam | Cell division control 48 | 376 | 467 | - | - | |
Accr5g02285 | 804 | FunFam | Transitional endoplasmic reticulum ATPase | 7 | 112 | - | - | |
Accr5g02285 | 804 | Pfam | Cell division protein 48 (CDC48), domain 2 | 132 | 194 | IPR004201 | - | |
Accr5g02285 | 804 | FunFam | Cell division control 48 | 113 | 209 | - | - | |
Accr5g02285 | 804 | Gene3D | - | 7 | 112 | - | - | |
Accr5g02285 | 804 | MobiDBLite | consensus disorder prediction | 770 | 785 | - | - | |
Accr5g02285 | 804 | NCBIfam | CDC48 family AAA ATPase | 31 | 764 | IPR005938 | GO:0016787 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr5g02285 | Accr-Chr5 | 49089456 | 49093129 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr5g02285 | 199 | 774 | Calmodulin-binding Proteins | AT3G56690 | 36.883 | 4.49e-129 | 409 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr5g02285 | K13525 | - | gmx:100791603 | 1483.39 |