Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02262 ATGGGCAGAGCTCCTTGTTGTGACAAGGCAAATGTGAAGAAAGGTCCATGGTCTCCTGAAGAAGATGCTAAGCTAAAGGAGTACATGGAGAAACATGGGACTGGTGGCAACTGGATTGCTCTCCCTCAAAAAGCCGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTAAGATGGCTTAACTATCTCAGACCCAACATTAAGCACGGCCAGTTCTCTGATGATGAAGATAGAATCATTTGCAGCCTCTTTGCTAGCTTTGGAAGCAGGTGGTCGATAATAGCAGCTCATTTACCTGGGAGGACAGACAATGATATCAAGAATTATTGGAACACCAAGCTTAAAAAGAAAATGATGCTTATGAATCCTTCAGTTAAAGGGAATAAGCCTCATCATCCTCAACATCAGCAACCTAACCTCTTAACCATTCTTCAAAACTCGACACCAGCTTCACCATTATCATTCTCAGACAACTCCAACTCTTACTACCACCATGCTAATGTCTCTTTCACAGGCTCTTCCAATCTTTGGACTGGTAACGCTTCTGCTTCTAACTTCAATTTTCAGCCCCAGGACATTACTTTCATGGGACACATTCAAAATCAGCCAGTTTCTATGGTTGCTGGTGAGGCTTCTAGTTGCAGCTCTTCTGATGGAAGCTGCAATAACAACCAGATTACTCATATCAAAGAAACAGAGTTTGTGGACGGAAGAGATGGAACTTTAATCCAACAGGTTGGTGGTGCGCATAATTATTATCTCAACAATGGATTGTGGGGGGAAAGTTTATTGGATTATGGGATGGATGAGATTAAACAATTAGCAAGCACAGATAATTGCAGCAACTTGTTTTTCGATGAGAAGAAGACAGAGGAAAGGGTTGTGTACTACTGA 891 0.4198 MGRAPCCDKANVKKGPWSPEEDAKLKEYMEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGQFSDDEDRIICSLFASFGSRWSIIAAHLPGRTDNDIKNYWNTKLKKKMMLMNPSVKGNKPHHPQHQQPNLLTILQNSTPASPLSFSDNSNSYYHHANVSFTGSSNLWTGNASASNFNFQPQDITFMGHIQNQPVSMVAGEASSCSSSDGSCNNNQITHIKETEFVDGRDGTLIQQVGGAHNYYLNNGLWGESLLDYGMDEIKQLASTDNCSNLFFDEKKTEERVVYY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02262 296 PANTHER OS09G0431300 PROTEIN 1 226 - -
Accr5g02262 296 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Accr5g02262 296 CDD SANT 71 113 IPR001005 -
Accr5g02262 296 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Accr5g02262 296 SMART sant 67 115 IPR001005 -
Accr5g02262 296 SMART sant 13 64 IPR001005 -
Accr5g02262 296 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Accr5g02262 296 Gene3D - 69 139 - -
Accr5g02262 296 Gene3D - 7 68 - -
Accr5g02262 296 CDD SANT 16 62 IPR001005 -
Accr5g02262 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Accr5g02262 296 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Accr5g02262 296 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Accr5g02262 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Accr5g02262 296 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02262 Accr-Chr5 48921786 48922878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02262 1 118 MYB Transcription Factor Family AT5G57620 86.441 2.81e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr5g02262 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02262 K09422 - gmx:100820139 347.051