Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02241 ATGGAGGATATCATTCAAGAGCAAGTTGTTATGGTGGCGTGCAAGGATGAGGCACAGATCATGAAGGGCAAGCGTACCAAGCGTCATAGGGCACCCTCCCCACTAAGGCTGGCCATAGCCATGCCTTGTACAACAGCCACCAGCAATGATGAATTGAGGGACAGCACGACGTCGTCCACGGCGGAAGAGGAGGACATGGCCAATTGTTTGATTCTTTTGGCTCACGGCGGCAAATCCTCCCACCCCACGGTGAGTGTCCCTAATAAGGATGGGGCATACCTTTACCAGTGCAAGACTTGTGACCGAGGCTTCCCTTCGTTCCGAGCTCTTGGCGGACACAGAGCCAGACACAAGAAGATGAAGACCAACCCAGAACGTGGTTGCAGCGACGATTATTGTACCAGCACTGCTCTCTCCTTGCAATTATCAAGTAGCAGGCTTTCTTTGTATGGCGCTAATAAATCATCGTCTAAAGTTCATGAGTGTTCTATTTGTGGGACTGAGTTCTCTTCTGGGCAAGCCTTGGGGGGTCACATGAGAAGGCATAGAACTTTGGTGAACGCCTCCGCCGCAACTACCGCCATTATTAGAAGCAGCCCTGAATCTCCAGACGTCAAGAAACCCAGAAACGTATTCAAGTTGGACTTGAATCTTCCTGCTCCTGATGATGTATTTTTATGGATTAGTTAG 690 0.4986 MEDIIQEQVVMVACKDEAQIMKGKRTKRHRAPSPLRLAIAMPCTTATSNDELRDSTTSSTAEEEDMANCLILLAHGGKSSHPTVSVPNKDGAYLYQCKTCDRGFPSFRALGGHRARHKKMKTNPERGCSDDYCTSTALSLQLSSSRLSLYGANKSSSKVHECSICGTEFSSGQALGGHMRRHRTLVNASAATTAIIRSSPESPDVKKPRNVFKLDLNLPAPDDVFLWIS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02241 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Accr5g02241 229 SUPERFAMILY beta-beta-alpha zinc fingers 94 182 IPR036236 -
Accr5g02241 229 SMART c2h2final6 160 182 IPR013087 -
Accr5g02241 229 SMART c2h2final6 95 117 IPR013087 -
Accr5g02241 229 Pfam C2H2-type zinc finger 95 119 - -
Accr5g02241 229 Pfam C2H2-type zinc finger 159 183 - -
Accr5g02241 229 PANTHER ZINC FINGER PROTEIN ZAT5 30 221 - -
Accr5g02241 229 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Accr5g02241 229 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Accr5g02241 229 Gene3D Classic Zinc Finger 93 182 - -
Accr5g02241 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 182 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02241 Accr-Chr5 48747140 48747829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02241 20 223 C2H2 Transcription Factor Family AT5G03510 44.706 5.65e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr5g02241 zf-C2H2_6 1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02241 - - pcin:129295621 271.552