Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02237 ATGACCTTTCCTTTCACCACCCTATTGGCCTCCTCCTTCCTTTTTCTCGTGGCTGTTCCGCTTCCATGGGTGCATGCAACTGTTCCACGCCAATGGAAGAAAGCTCATGCTACCTTCTACGAAGGAAGCTCCACATCATACGGAGGAGCATGTGGGTACGATGATATTGCACGACAAGGGTACGGTGATACAGCAGCGGTGAGCACGGCCATGTTCAAGGATGGACTAACGTGTGGAGCGTGTTACGAAATCCGATGTGTTGATTCTCCTCAATGGTGCAAGCGAGGCCAACCCGTTCTTCATGTCACCGCCACCAACCATTGCCCGGGAGGCTCCGGTGATGGGTGGTGCAGTCCTCCAAAAAAGCACTTTGATTTAGCCAAACCTTCCTTCGCCAAGATTGTCACCGACTTCAAGGCCGGCGTCGTCCCCGTCGAGTACCGCAGGGTACGGTGCAAGAAGAATGGAGGGATTAAAGTGAAGATGACAGGGAATCCGTACTACAACGCGGCGTGGGTGTACAATGTGGGAGGAGCTGGCAACGTGGTGGCGGTGCAGGTGAAGAGTGGGAACTCGCCGGTGTGGAAGGAGATGAAGAGAGAGTGGGGTCAGAAATGGGTGCTTAATGATAAGATAGACGAAGGAGATTTGAGCTTCAGGGTCCACACAAGCGATGGCAAGGTCGTGACCGCCTCCTCTGTTTGCCCCAAGGGTTGGCAATATGGTCAAACCTTTCAAGCCCATCAGAACTTTGCTTGA 759 0.5323 MTFPFTTLLASSFLFLVAVPLPWVHATVPRQWKKAHATFYEGSSTSYGGACGYDDIARQGYGDTAAVSTAMFKDGLTCGACYEIRCVDSPQWCKRGQPVLHVTATNHCPGGSGDGWCSPPKKHFDLAKPSFAKIVTDFKAGVVPVEYRRVRCKKNGGIKVKMTGNPYYNAAWVYNVGGAGNVVAVQVKSGNSPVWKEMKREWGQKWVLNDKIDEGDLSFRVHTSDGKVVTASSVCPKGWQYGQTFQAHQNFA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02237 252 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Accr5g02237 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Accr5g02237 252 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Accr5g02237 252 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Accr5g02237 252 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Accr5g02237 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Accr5g02237 252 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Accr5g02237 252 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Accr5g02237 252 SMART dpbb_1 64 147 IPR007112 -
Accr5g02237 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 247 IPR007117 -
Accr5g02237 252 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Accr5g02237 252 CDD DPBB_EXPA_N 31 152 - -
Accr5g02237 252 Pfam Expansin C-terminal domain 158 236 IPR007117 -
Accr5g02237 252 SUPERFAMILY Barwin-like endoglucanases 31 175 IPR036908 -
Accr5g02237 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Accr5g02237 252 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Accr5g02237 252 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Accr5g02237 252 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Accr5g02237 252 Gene3D - 153 251 IPR036749 -
Accr5g02237 252 Pfam Lytic transglycolase 64 147 IPR009009 -
Accr5g02237 252 PANTHER EXPANSIN-A15 12 249 IPR002963 GO:0009664
Accr5g02237 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 157 IPR007112 -
Accr5g02237 252 Gene3D - 23 152 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02237 Accr-Chr5 48702271 48703225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02237 32 249 Expansin Gene Family AT2G40610 50.000 3.29e-76 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02237 - - pvy:116112160 277.33