Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02224 ATGGTGGAATCAGCATCTGGTGACTCCTCCAACACCACTCCGCCTCCAGAGAGCAAACCGGCGGCCACCGAGCATAAAAGTTGGGCCGATGAAGCTGAGGAAGAAGTTCCAGAAGAAACGAACGACGCGCCCAGTTCATCATCAGTGTCCTCGCTTAACGTTGACGCATTAGCCATCGACGAGAATAAGAAGACTGCTACTAAGTTCTTGGATGAACCGGAGGACTCCAACATTCAAGCGGTTACCTCTGGAAATACTCCATATACCTCAGCGAGCACCTTTGAAGATTTGAATCTCTCTCCAGAGCTGCTAAAAGGATTGTATGTTGAGATGAAATTTCAGAAACCTAGCAAAATTCAAGCTATCAGTTTGCCAATGATCTTGAGCCCTCCTCATAAGGATCTGATTGCACAGGCATATAATGGTTTAGGCATGACAACATGTTTTGTGCTTGGGATACTAAGTCGCGTTGACCCCAGCCTGAAGGCTCCTCAAGCTCTTTACATTTGTCCAACTAGGGAATTAGCTATTCAGAATACCGAAGTTCTTCAAAAGATGGGGAAATACACTGGCATTATTTCAAAATCTGCCGTACCAGCAGACAGCAGAGATTATATTCCTATGGCAAAACGGGCACCAATTATGGCACAAGTAGTAATTGGGACCCCTGGAACAATTAAGAAGTGGATAATAAATAAGAAACTGAGCGCAGTCAGATTAAACATTCTTGTCTTCGATGAGGCTGATCAAATGCTTGCACAGGACGGTTTTAAAGATGATTCTTTGAGGATAATGAAATATATAAGAGGGGTCAATGCTAACTTTCAGGTTCTTCTGTTTTCTGCTACATTTAATGAATTTGTCAAGAATTTGGTTTCAAGGACAGTTAAGAAGGATCACAATCAACTTTTTGTAAAGAAAGAAAAGCTATCTTTTGAGACAGTCAAACAATTCAGGGTGAATTGTCTTGATGAACTCTCTAAGGTTGAAGTGATCAAAGATTACATCTTTGAAATAGGAGAGAATGTGGGCCAGACTATCATATTTGCACCCACAAGAGATAGGGCAAGAATGTTGCACGAATCACTCGCTGAATTCGGCTACGAGGTCACTTCTATTCACAGCGCTCTTCAGCATGAGCAAAGAGATCAGCTTGTGAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTGATATCAACTGATGTTCTTGCCCGAGGCTTTGATCAACAACAGGTTAATTTGGTTATTAATTATGATCTTCCAGTGAATCATATTGTGGGGTATGCTCAGGAACAGGAGCCCGATTATGAGATGTATTTGCACAGGGTTGGGATGGCTGGACGTTTTGGGCGCAAGGGGGCTGTATTTAACCTCATATGTGGTGAGAGGGATGTAAATCTCATGGCGAAGATCGAGCAGCACTTTGGCACCCATATAACTGAGGTCCGAGCTAAAAGCGTTGAAGACTATAAAGTTGCTCTTAGGGGGGCTGGTTTACTGCAGTGA 1506 0.4303 MVESASGDSSNTTPPPESKPAATEHKSWADEAEEEVPEETNDAPSSSSVSSLNVDALAIDENKKTATKFLDEPEDSNIQAVTSGNTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPHKDLIAQAYNGLGMTTCFVLGILSRVDPSLKAPQALYICPTRELAIQNTEVLQKMGKYTGIISKSAVPADSRDYIPMAKRAPIMAQVVIGTPGTIKKWIINKKLSAVRLNILVFDEADQMLAQDGFKDDSLRIMKYIRGVNANFQVLLFSATFNEFVKNLVSRTVKKDHNQLFVKKEKLSFETVKQFRVNCLDELSKVEVIKDYIFEIGENVGQTIIFAPTRDRARMLHESLAEFGYEVTSIHSALQHEQRDQLVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVNHIVGYAQEQEPDYEMYLHRVGMAGRFGRKGAVFNLICGERDVNLMAKIEQHFGTHITEVRAKSVEDYKVALRGAGLLQ 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02224 501 Gene3D - 70 309 IPR027417 -
Accr5g02224 501 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 491 IPR001650 -
Accr5g02224 501 SMART helicmild6 357 450 IPR001650 -
Accr5g02224 501 MobiDBLite consensus disorder prediction 1 52 - -
Accr5g02224 501 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 302 IPR014001 -
Accr5g02224 501 Pfam DEAD/DEAH box helicase 118 290 IPR011545 GO:0003676|GO:0005524
Accr5g02224 501 SMART ultradead3 112 318 IPR014001 -
Accr5g02224 501 Gene3D - 312 493 IPR027417 -
Accr5g02224 501 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 56 468 - -
Accr5g02224 501 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 121 IPR014014 GO:0003724
Accr5g02224 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 464 IPR027417 -
Accr5g02224 501 MobiDBLite consensus disorder prediction 1 18 - -
Accr5g02224 501 Pfam Helicase conserved C-terminal domain 329 450 IPR001650 -
Accr5g02224 501 CDD SF2_C_DEAD 315 459 - -
Accr5g02224 501 CDD DEADc_DDX19_DDX25 99 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02224 Accr-Chr5 48560557 48564347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02224 74 482 Eukaryotic Initiation Factors Gene Family AT3G19760 34.230 2.18e-68 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02224 K18655 - qsa:O6P43_010208 677.167