Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02223 ATGGCGGAATCTGTTGACTCCTCCAACACCACTCCGCCTCCGGAGAGCAAACCGGCGGCTACCGAGCATAAAAGTTGGGCCGACGAAGCTGAGGAAGAAGTTCCAGAAGAAACGAATGACGCCCCCAGTTCATCATCAGTGTCCTCGCTTAACGTTGACGCATTAGCCATCGACGAGAATAAGAAGACTGCTACTAAGTTCTTGGATGAACCGGAGGACTCCAACATTCAAGCGGTTACTTCTGGCGATACTCCTTACACCTCAGCGAGCACCTTTGAAGATTTGAATCTTTCTCCAGAGCTGCTAAAAGGATTGTATGTTGAGATGAAATTTCAGAAGCCGAGCAAAATTCAAGCTATCAGTTTGCCAATGATATTGAGCCCTCCTCATAGGGATCTTATTGCACAGGCACATAATGGTTCAGGCAAGACAACATGTTTTGTGCTTGGGATGCTAAGTCGCGTTGACCCCAACCTGAAGGCTCCTCAAGCTCTTTGCATTTGTCCAACTAGGGAATTAGCTATTCAGAATACCGAAGTTCTCCGAAAGATGGGGAAATACTCTGGCATTATTTCAGAATGTGCCGTACCAGCTGACAGCAGGGATTCTATCCCTATAGCAAAACGGGCACCAATAATGGCACAAGTAGTAATTGGGACCCCTGGAACAATTAAGAAGTGGATAACATATAAGAAACTGAGTGCAGTCAGATTAAACATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCAGAGGATGGTTTTAAAGATGATTCTTTGAGGATAATGAAAGATATAGAAAGAGTCAATGCTAACTGTCAGGTTCTTCTTTTTTCTGCTACATTTAATGAAATTGTCAAGAATTTTGTTTCAAGGACAGTTAAGAAGGATCACAATCAACTTTTTGTAAAGAAAGAAGAGCTATCTTTAGAGGCAGTAAAACAATACAGGGTAAATTGTCTTGATGAACTCTCCAAGGTTGAAGTGATCAAAGATTACATCTTTGAAATAGGAGAGAATGTGGGCCAGACTATCATATTTGTGCGCACAAGACATAGTGCAAGCATGTTGCACCAATCACTCGCTGAATTGGGCTACGAGGTCACTTCTATTCAAGGCGCTCTTCAGCATGACGAAAGAGATAAGATTGTCAAGGAGTTCAGAGATGGTCTGACTCAAGTTCTGATATCAACTGATGTTCTTGCCCGAGGCTTTGATCAACAACAGGTCAATTTGGTTATTAATTATGATCTTCCAGTGAAACATATTGTGGGGTATGCTCGGGAACAGGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGGAGGGCTGGACGTTTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGGTGAAAGGGATGCAAATCTTATGGCGAAGATTGAGCAGCACTTTGGCACCCATGTAACTGAGGTCCGAGCTAAAAGCGTTGAAGACTATAAAGGTGCTCTTAGGGAGGCTGGTTTATTGCAGTGA 1500 0.4347 MAESVDSSNTTPPPESKPAATEHKSWADEAEEEVPEETNDAPSSSSVSSLNVDALAIDENKKTATKFLDEPEDSNIQAVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNTEVLRKMGKYSGIISECAVPADSRDSIPIAKRAPIMAQVVIGTPGTIKKWITYKKLSAVRLNILVFDEADQMLAEDGFKDDSLRIMKDIERVNANCQVLLFSATFNEIVKNFVSRTVKKDHNQLFVKKEELSLEAVKQYRVNCLDELSKVEVIKDYIFEIGENVGQTIIFVRTRHSASMLHQSLAELGYEVTSIQGALQHDERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHIVGYAREQEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDANLMAKIEQHFGTHVTEVRAKSVEDYKGALREAGLLQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02223 499 SMART helicmild6 355 448 IPR001650 -
Accr5g02223 499 SMART ultradead3 110 316 IPR014001 -
Accr5g02223 499 MobiDBLite consensus disorder prediction 1 52 - -
Accr5g02223 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 300 IPR014001 -
Accr5g02223 499 CDD SF2_C_DEAD 313 457 - -
Accr5g02223 499 CDD DEADc_DDX19_DDX25 97 296 - -
Accr5g02223 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 463 IPR027417 -
Accr5g02223 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 489 IPR001650 -
Accr5g02223 499 MobiDBLite consensus disorder prediction 1 16 - -
Accr5g02223 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 119 IPR014014 GO:0003724
Accr5g02223 499 Pfam DEAD/DEAH box helicase 116 288 IPR011545 GO:0003676|GO:0005524
Accr5g02223 499 Gene3D - 68 307 IPR027417 -
Accr5g02223 499 Pfam Helicase conserved C-terminal domain 327 448 IPR001650 -
Accr5g02223 499 Gene3D - 310 492 IPR027417 -
Accr5g02223 499 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02223 Accr-Chr5 48548190 48551609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02223 83 480 Eukaryotic Initiation Factors Gene Family AT1G72730 36.855 4.00e-72 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02223 K18655 - qsa:O6P43_010208 738.028