Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02213 ATGGAATGGAATGGAAGCATCAGAACCTTTGTTCCTCGAGCTGAGTCTTCCTTAAGTTTCCTATACAACTATAATTGCAGCTCATATCCAGGAATGGAAGTGAAACATGCAGCAGCGTCACAAGGGTTAATTCCGGACATGGAGAAAATAAAGTATGGGAACCAGATGGAGAAGAAGAAGCGACTGACGAGCGAGCAGCTTGAGTCACTGGAGAGGAGCTTCCAGGAGGAAATAAAGTTGGACCCTGACAGGAAGATGAAGCTCTCAAGGGAATTAGGGCTGCAGCCTCGCCAGATTGCTGTATGGTTTCAAAATAGGCGTGCTAGGTGGAAGGCTAAGCAGCTGGAGAACTTGTATGATGCCCTCAAACAAGAATTTGATGCTATCTCTGAGGAAAAACAGAGGCTTCAAGAAGAGGTTGTGAAATTGAAGGCAATACTAAGGGAGCAAGCTTCAAAGACACAAGTTTCTGCAGGTTACACAGAAGTTTCTGGGGAAGAAACAGTGGAAAGCACGTCAGAGGCAGCACTGCGAGGCCCTAACAAGCAGCTACGAGGAATTACGAGCCATCATCATCAGCATCAGCAGAATGTTGCAGAAGCCAATTGTTCTTTCACTGTAGAGGATTATACCACTGTTTCACTGCCCTACTGGTCCGCTCTTGTGCCTTATTATCCATAA 681 0.4596 MEWNGSIRTFVPRAESSLSFLYNYNCSSYPGMEVKHAAASQGLIPDMEKIKYGNQMEKKKRLTSEQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLENLYDALKQEFDAISEEKQRLQEEVVKLKAILREQASKTQVSAGYTEVSGEETVESTSEAALRGPNKQLRGITSHHHQHQQNVAEANCSFTVEDYTTVSLPYWSALVPYYP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02213 226 Gene3D - 51 121 - -
Accr5g02213 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 189 IPR045224 GO:0003700
Accr5g02213 226 Coils Coil 53 73 - -
Accr5g02213 226 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Accr5g02213 226 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Accr5g02213 226 FunFam Putative homeobox-leucine zipper protein ATHB-51 55 118 - -
Accr5g02213 226 SMART HOX_1 56 117 IPR001356 GO:0003677
Accr5g02213 226 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Accr5g02213 226 Coils Coil 105 153 - -
Accr5g02213 226 Pfam Homeobox associated leucine zipper 113 147 IPR003106 GO:0006355|GO:0043565
Accr5g02213 226 CDD homeodomain 58 114 IPR001356 GO:0003677
Accr5g02213 226 SUPERFAMILY Homeodomain-like 46 115 IPR009057 -
Accr5g02213 226 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Accr5g02213 226 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02213 Accr-Chr5 48400298 48401537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02213 1 143 Homeobox Transcription Factor Family AT5G03790 54.938 4.47e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr5g02213 Homeodomain 3.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02213 - - gmx:100778007 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02213 5 48400298 48401537 Accr2g02313 2 58351867 58352698 CCT
Accr5g02213 5 48400298 48401537 Accr5g02213 5 48400298 48401537 ECH