Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02199 ATGGACATGGACAATTCCCGTAGATCTTTTGATAGGATGGGAAAACTTGGTATGAAAAAACCCCGATTGCACTACGAGCTCGAGTTCGACACAAATCAAAGTGTTCGACCATTTCCTCAGCGACAAGTGACTTCTGGGGTTAACACGTTGGCTTCCGCTAGGTTTCGAACAAATGACAGAGATCCGGGAAGCAATGATTCGGGTCTCGGTCCTCAGCAACTGCTGCACCAGGAGCTTGTAACTCAGTATAAGGCTGCGCTGGCTGAGCTGACTTTTAATTCAAAGCCAATAATTACGAACTTGACTATAATTGCTGACGAGAATGTCTATGCGGCCAAGGCAATTGTTGCGACTGTTTGCTCTAATATTCTTGAGGTGCCTAGTGAGCAAAAACTGCCATCACTCTATCTGCTGGACAGCATAGTTAAGAATATTGGGCGGGAATATATTAAACACTTTGCTGCCAGACTACCTGAGGTATTTTGCAAGGCTTACAGACAGGTTGATTCATCTGTCCATTCAAGCATGAGGCATCTTTTTGGAACTTGGAAAAGGGTCTTTCCTCTTCAGGCTCTTGAGATGATCGAGAAAGAACTGGGTTTTACTCCAGTAGCCAATGGCTTATCTTCTCCATCCCCATCAACCATGCTCAAGAGTGATTCACAACCACAACGCCCGTCTCATGGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAACGACTTCAGCAATCCAGTAGGGCCATAGGTACAACTAATGATATGACTGGAACTATTGCAAGCTCAACTGAGGACACAGATAGGCTGGATAGAGCCATGGTTACATCCCGACCTTGGGCAGATCCCAGACTTAAAATGCGCAACATTAAGCCTGCCAATAGAGATGCTTTTGATGATTATCTTCCTGAAAAGAGCATCGGTATATCATATGAAGGCAATGGACAAGGTTCCACTCTTTCTAGTAATATGGGCTTGGGCATCGGAGGAACTGGTGGTAGGGCCACTGATTTTGGACGTGACAAAATATGGTATAAATCAGGCAAAGATATTGGAGAGATTTCTGGGCAAGGAAATGGTTTAAGTCTCAAGCATTCTGTTTCAACTCATGAAGCAACAAAGTCATTAAACTTGGATGCACATCAGCCACCAACACAAAGCTTAAGTGAAATATCCATAAGGAGTAGCGTGATATCAAGGAGCTGGAAAAATTCTGAGGAAGAGGAATTCTTGTGGGACAATATGGACTCTGGGGTGACTGATAACACTGCATCCAGTGTCTCTAGTGACTTGGCTAAAGATCATTGGACTGCTGATGATGAAGGCTTGGATCCACCGCTATCACGGCAATTGCAGGGGCGGCATTTACTTGATGAGCTGAATTGTAAGCCAGATCCCATGGAAGGCTTTGCATCTACTGCAGGAATGAGGGGGCAGCACAAATTTCACACAGTTCAAGCTGAGACCCCTTTGCGTGAACAGTCGTTGCAAGAAAAAATGTGCCAGCCTTACCATGAGCGAAATTTGACTGAGCAACACCACCAACAGACTCTTAAAGCATCTCACTTTTCTGGAGATTTGCAGGGCAAATATATTCAAGATTCTTCAGCTGCCCATTCTTCTAATATTCAGGCTGGCAAGTTGCAAAAATCACAACAAAGGGACTGGCAAGGTCCAGCACCTTTATTGACTTATTCTCAGCCAAGGCATTATACTGGAGTTTTGCCAAAGCAGCAGCCTGGCTCTTCTCTTCCTGAAGTTTCTGTTAAGATAGAGGAGCTAGACCAGTCAAAAGTTTCGCTGGTCAGCGAACCTCCTGATCAGTCAACATCAAGTGGTTTGTTAGCTGCAGTTATGAAGAGTGGAATTCTTAATAGTTCGGCTATGAATAATCTACTTTCTACAAGTTTCCTGGATACAAGGGTTCTGCCATTACAATCGGGGAATCAGCCTACACAGCTAGGTGGACCTCAAGGGGAGGCTGCATCTCCATCTTCATTTGGTACTTCATCGGATAACTCATCCCATCTGACAAAAATATCTCAACGAAAGGTTGGACAACTACCTAGGGCATCTGATCCGCCTCCAGCTTCCTCTGCCGTGTGTAGTACCTCATCTCAGACCTCAAATCCCATCAATGCCTCAAGTCCAATTTCAAACCTTTTAAGCTCATTAGTTGCGAAGGGTTTGATATGTGCAAAGTCAGAGTCATCAATTAAGGCACCAACTGATATGCTGAGTCGTTTGGAAGATACAAGTCACAGTATTAGCACAAGTAGCTCTTCACCAGTTGGTTCAGGTTCTGGTTCTCCAGCTGTCCATGTATCATCAATTGGAGATGAGGTAGACCATGAAGCAAACAGCTCTGTTTACTTATCTAAGTCAACCGCCACAGAAACGATAAACCTTATTGGCTATGAGTTTAAGCCTGATGTAATCCGACAATTCCATCCATCTGTGATCAGCGAACTATGGGATGATCTTCCGCATCATTGCAGCATTTGTGGCCTTAGGCTTAGACATCAAGAACAATTTAATGGACACTTGGTATGGCATGCCATGAGGGGAAAGGAACAAAATGGTCTAATTCAGGCATCAAGAAGATGGTATGTGCAGTCAAGTGAGTGGATTACTGGCAAGGTTGAATATTCAACTGAATCCGAGTCTACCAATTCTGTAGACGTGTACTGTGAGGAAGCAGACAAGAGTGAACTGGATACAATGGTTCCATCAGACGAAAATCAATGCTTGTGTGTATTCTGTGGTGAGCTATTTGAGGATGTTTACTGTCAAGAAAGGGATGAGTGGATGTTCAAGGGCGCTACTTACCTAACCAACTCAGACAATGATGTTGAGACAGCCAGTAGAAATGTCATCACTGCTAGGGGTCTCATTATCCATGCAAAATGTTTATCGAAGACCTCAATAATCAGTGTTCCAAAGATGGAGCAGGTTTAA 2955 0.4399 MDMDNSRRSFDRMGKLGMKKPRLHYELEFDTNQSVRPFPQRQVTSGVNTLASARFRTNDRDPGSNDSGLGPQQLLHQELVTQYKAALAELTFNSKPIITNLTIIADENVYAAKAIVATVCSNILEVPSEQKLPSLYLLDSIVKNIGREYIKHFAARLPEVFCKAYRQVDSSVHSSMRHLFGTWKRVFPLQALEMIEKELGFTPVANGLSSPSPSTMLKSDSQPQRPSHGIHVNPKYLERQRLQQSSRAIGTTNDMTGTIASSTEDTDRLDRAMVTSRPWADPRLKMRNIKPANRDAFDDYLPEKSIGISYEGNGQGSTLSSNMGLGIGGTGGRATDFGRDKIWYKSGKDIGEISGQGNGLSLKHSVSTHEATKSLNLDAHQPPTQSLSEISIRSSVISRSWKNSEEEEFLWDNMDSGVTDNTASSVSSDLAKDHWTADDEGLDPPLSRQLQGRHLLDELNCKPDPMEGFASTAGMRGQHKFHTVQAETPLREQSLQEKMCQPYHERNLTEQHHQQTLKASHFSGDLQGKYIQDSSAAHSSNIQAGKLQKSQQRDWQGPAPLLTYSQPRHYTGVLPKQQPGSSLPEVSVKIEELDQSKVSLVSEPPDQSTSSGLLAAVMKSGILNSSAMNNLLSTSFLDTRVLPLQSGNQPTQLGGPQGEAASPSSFGTSSDNSSHLTKISQRKVGQLPRASDPPPASSAVCSTSSQTSNPINASSPISNLLSSLVAKGLICAKSESSIKAPTDMLSRLEDTSHSISTSSSSPVGSGSGSPAVHVSSIGDEVDHEANSSVYLSKSTATETINLIGYEFKPDVIRQFHPSVISELWDDLPHHCSICGLRLRHQEQFNGHLVWHAMRGKEQNGLIQASRRWYVQSSEWITGKVEYSTESESTNSVDVYCEEADKSELDTMVPSDENQCLCVFCGELFEDVYCQERDEWMFKGATYLTNSDNDVETASRNVITARGLIIHAKCLSKTSIISVPKMEQV 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02199 984 MobiDBLite consensus disorder prediction 534 559 - -
Accr5g02199 984 ProSitePatterns Zinc finger C2H2 type domain signature. 831 851 IPR013087 -
Accr5g02199 984 MobiDBLite consensus disorder prediction 210 231 - -
Accr5g02199 984 CDD CID_Pcf11 80 199 IPR047415 -
Accr5g02199 984 SUPERFAMILY ENTH/VHS domain 77 198 IPR008942 -
Accr5g02199 984 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Accr5g02199 984 MobiDBLite consensus disorder prediction 50 71 - -
Accr5g02199 984 MobiDBLite consensus disorder prediction 749 772 - -
Accr5g02199 984 MobiDBLite consensus disorder prediction 645 712 - -
Accr5g02199 984 MobiDBLite consensus disorder prediction 749 774 - -
Accr5g02199 984 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 48 973 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Accr5g02199 984 MobiDBLite consensus disorder prediction 534 560 - -
Accr5g02199 984 MobiDBLite consensus disorder prediction 210 228 - -
Accr5g02199 984 Gene3D - 69 200 IPR008942 -
Accr5g02199 984 SMART 558neu5 78 200 IPR006569 -
Accr5g02199 984 MobiDBLite consensus disorder prediction 645 681 - -
Accr5g02199 984 FunFam polyadenylation and cleavage factor homolog 4 72 200 - -
Accr5g02199 984 MobiDBLite consensus disorder prediction 696 712 - -
Accr5g02199 984 Pfam CID domain 84 185 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02199 Accr-Chr5 48206808 48213806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02199 803 969 C2H2 Transcription Factor Family AT4G04885 35.119 1.57e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02199 K14400 - gmx:100788958 845.114