Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02125 ATGTCCATAAATCACTACTCGCCTGACATTTCAGAGGCCACGCTGTGGTGGACTGAGCAACATCGCTACCACCACCGTCATCATCAAGGTTTCCTTATGCAACCCATACAAAACCCCTCTCCGGCTTCGGCCTGGCCTTCCTATCTCTGCCCTCCTGCACCGCCAAACCGCTTCAACCTCAACCACGATGACGACGAAGACGAAGACGACGATAGTATTCAACTCCTACAGACCGGTCACGTGGAAAACGATGGGCCCACGTCGCAGGGAGGTTCGGGCGGGGAAGACGAGAAGGAAGGGATGTTCGAGAAGCCATTGACGCCGAGCGACGTGGGGAAGCTGAACAGGCTGGTGATTCCGAAGCAGCACGCGGAGAAGTACTTCCCGCTGGGCGGGTCAGGAGGGGGGGAGGCGGCGGCCGGAGAGAGTAAGGGGGTGTCGCTGAGTTTCGAGGACGAGGCGGGCAAGTGCTGGAGGTTCCGTTACTCGTATTGGAACAGCAGTCAGAGCTACGTGCTGACCAAAGGCTGGAGTCGTTACGTTAAGGACAAGCGTCTCGATGCTGGCGACGTCGTTTTCTTCCAGCGCCACCGCACCGACTCCAACCGCCTCTTCATCAACTGGAGGCGCCGCCATCACTCTCCATCCACCCCCGCCCACGTTACCAGAGCCACCACCACAGACGCCAACAACACCAATATCAATACCAATAACAACAATGTTGGTGTTGGTGTGGGTGTGGGGTGGACCAGAAGTTTCTATGCCGCACATCCTTATCCTACGCATCATCATCATCAACCCTTGCCATACCAACCCGACTGTCTTCATGCAGGCGTAGGGTTGGAAGCAGAGCAGAACAAAACAACGACGTCGCCACCCGGGAACAACTCCAGCTCCAGGATACTAAGGCTGTTCGGTGTAAACATGGAATGCCAGCCCGACGAATCCGGATCCTCAGGACCCGAATACTCGTACATGTCATCGATGACGTCGTCCCAGCAGGGTATAGCCACCCAGCACCACCGCCTCTACGGCCTTTATAATAATCAAACTGCTTCTTATTATTCCAATCACTTGGTACGTCAACAACCACACTCCTAG 1101 0.5559 MSINHYSPDISEATLWWTEQHRYHHRHHQGFLMQPIQNPSPASAWPSYLCPPAPPNRFNLNHDDDEDEDDDSIQLLQTGHVENDGPTSQGGSGGEDEKEGMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGSGGGEAAAGESKGVSLSFEDEAGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVFFQRHRTDSNRLFINWRRRHHSPSTPAHVTRATTTDANNTNINTNNNNVGVGVGVGWTRSFYAAHPYPTHHHHQPLPYQPDCLHAGVGLEAEQNKTTTSPPGNNSSSRILRLFGVNMECQPDESGSSGPEYSYMSSMTSSQQGIATQHHRLYGLYNNQTASYYSNHLVRQQPHS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02125 366 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 320 IPR044800 GO:0003700
Accr5g02125 366 MobiDBLite consensus disorder prediction 78 107 - -
Accr5g02125 366 ProSiteProfiles B3 DNA-binding domain profile. 102 212 IPR003340 GO:0003677
Accr5g02125 366 SMART B3_2 102 212 IPR003340 GO:0003677
Accr5g02125 366 CDD B3_DNA 101 202 IPR003340 GO:0003677
Accr5g02125 366 Gene3D - 96 220 IPR015300 -
Accr5g02125 366 SUPERFAMILY DNA-binding pseudobarrel domain 101 211 IPR015300 -
Accr5g02125 366 Pfam B3 DNA binding domain 102 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02125 Accr-Chr5 47607049 47608623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02125 95 315 RAV Transcription Factor Family AT5G06250 52.232 3.09e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr5g02125 B3 1.9e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02125 K09287 - gmx:100795470 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02420 2 59535029 59536235 Accr5g02125 5 47607049 47608623 CCT
Accr5g02125 5 47607049 47608623 Accr5g02125 5 47607049 47608623 ECH