Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02107 ATGTCCGGCGGCGTTGGAGCTTCAAACTGCCAGGCATCGCCACCACCTGAGACTTCTCAGAATCGGCCGCCTCCGAAGCGTCACCTGGCCTTCGCATCGACTAAACCACCGTTTGTTCCTCCGGATGATTACCACAGCTTTTCGTTTCCCAACTCTAGAAGGGCTGCCGATCAAGAACCTGAAGCTGTTGTCGTTCGATCTCCGTACATGAAGCGGAAGAGCATAGTGAATGACAACAAGGGAGAGTCCCAGGAATGGAGTAACAGCCCAGCTGCTAATGTAATGAGTAGTCCCCTCAAAACACCTGTGTCTGCAAAAGGCGGAAGGACATACAATAAGTCCAAGGTTGCCAAAGAAGGAAAATCTGGTCCTCAGACTCCCATCTCGAATGCTGGTTCCCCTTCTCTAACTCCGGCTGGCAACTGTCGTTACGATAGTTCCTTGGGTTTGTTGACTAAAAAGTTCATTAATTTGCTCAAGCATGCGGAGGATGGTGATCTTGACCTAAACAAAGCGGCTGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACCAATGTTTTGGAAGGAATTGGTCTCATTGAGAAAAAGCTCAAAAATAGAATACATTGGAAGGGAATCAAATCTTCTGCATCCGGAGAGGTTGATGGTGATGTATCTATGCTAAAGGCAGATGTTGAGAAGCTTTCTTTGGAAGAGCAAAGATTAGATGATCAAATAAGGGGAATGCAGGAAAAGCTGAGAAATTTGAGCGAAGATGAAAAAAACCAGAAGTGGCTTTTTGTAACTGAAGAAGATATTAAGGGCCTACCCAGCTTGCAGAATGAAACTCTAATAGCAATTAAAGCCCCACATGGAACCACCTTGGAAGTCCCTGATCCTGAGGAAGCTGTTGACTATCCACAGAGGAGATACAGAATAATTCTTAGAAGCACAATGGGTCCCATTGATGTCTACCTTGTCAGTCAATTTGAGGAGAAATTCGAAGAGATGAATGGCGTTGAGCCCCCTGCAAGCCTCCCACTTGCTTCAAGTTCCGGGTCCAATGAACACCTAACGACAGAAATGACACCTCTTGAACACAATGGAAAGGGTCTTGAATCTCAAACTCAACTGTCTTCTCATACATGCTCTGATTTAAATGCCTCACCAGAGTTCGGTGGGGGCATTATGAGAATTGTTCCTTCTGATGTTGATAATGATGCAGATTACTGGCTACTATCAGATGCTGACGTTAGCATTACAGATATGTGGAGAACAGACTCCAGTGTTGATTGGAATGGGGTGGACATGCTTCCCTCTGATTTTGGAATCATCTCAAGGCCACAAACTCCATCATCTGGGTTTGCTGATGGACCATCTACATTAGCTAACTCTACTCAGAGGTGA 1395 0.453 MSGGVGASNCQASPPPETSQNRPPPKRHLAFASTKPPFVPPDDYHSFSFPNSRRAADQEPEAVVVRSPYMKRKSIVNDNKGESQEWSNSPAANVMSSPLKTPVSAKGGRTYNKSKVAKEGKSGPQTPISNAGSPSLTPAGNCRYDSSLGLLTKKFINLLKHAEDGDLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIKSSASGEVDGDVSMLKADVEKLSLEEQRLDDQIRGMQEKLRNLSEDEKNQKWLFVTEEDIKGLPSLQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNGVEPPASLPLASSSGSNEHLTTEMTPLEHNGKGLESQTQLSSHTCSDLNASPEFGGGIMRIVPSDVDNDADYWLLSDADVSITDMWRTDSSVDWNGVDMLPSDFGIISRPQTPSSGFADGPSTLANSTQR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02107 464 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Accr5g02107 464 MobiDBLite consensus disorder prediction 440 464 - -
Accr5g02107 464 Coils Coil 221 255 - -
Accr5g02107 464 PANTHER TRANSCRIPTION FACTOR E2F 81 425 IPR015633 GO:0000978|GO:0006357
Accr5g02107 464 Gene3D - 137 210 IPR036388 -
Accr5g02107 464 FunFam E2F transcription factor 1 137 210 - -
Accr5g02107 464 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Accr5g02107 464 MobiDBLite consensus disorder prediction 80 100 - -
Accr5g02107 464 CDD E2F_DD 224 325 IPR032198 GO:0046983
Accr5g02107 464 Gene3D - 215 325 - -
Accr5g02107 464 MobiDBLite consensus disorder prediction 1 139 - -
Accr5g02107 464 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983
Accr5g02107 464 MobiDBLite consensus disorder prediction 1 16 - -
Accr5g02107 464 SUPERFAMILY "Winged helix" DNA-binding domain 143 206 IPR036390 -
Accr5g02107 464 SUPERFAMILY E2F-DP heterodimerization region 221 325 IPR037241 -
Accr5g02107 464 MobiDBLite consensus disorder prediction 441 464 - -
Accr5g02107 464 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02107 Accr-Chr5 47432806 47437066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02107 23 464 E2F-DP Transcription Factor Family AT2G36010 58.422 6.29e-169 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Accr5g02107 E2F_CC-MB 3.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02107 K06620 - gmx:100811762 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02107 5 47432806 47437066 Accr5g02107 5 47432806 47437066 ECH