Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02092 ATGGCGACGTACTTTCATGGCAATCCTGAAATCCAACCACCGGATGGCCTCCAAACTCTGGTTCTCATGAACCCTAGCTACATCCACTACCCTGACACCCCGCCGCCGCACCCCAGCAACTTTGTCTTCCTCAACTCCATCGCAGCCGGCAACAACTCCGTTACTCCCCAAAACCTCCACCACGTGCCTCCCAATCACACCCAACAATTCGTCGGCATCCCTCTGCCGACCGTTGCCGCCACCTCCTCCTCCCAGGACCCCGGCCAGCAACACTCGGTGCACCCTCATCAAGATGGATCCACCTTGCATGGATTTGTGCCTCGCATGCAGTGCAATCTCTGGAACCAAATCGACCCAAACGCGACGGCGCGTGAGACTCCACGAACGCAGCAGCAGGGACTGTCGCTGAGCCTGTCCTCCCAGCAAGCTGGAATGGGCTCTTTCCGTGCTGATCGTGACGTGGCATCGCAGGGCCAAGCACCTGCTATGTCTGGCGAAGACTTTCCCGGGTCGGGCGGGTCGCCGTCTTCGGTTTCCGGGGTGACCAACGTGAACGGTGTTTCGGGGATTCAGAGTGTGCTCCTAAGCTCCAAGTACTTGAAAGCAGCACAGGAACTCCTCGACGAGGCCGTCAATGTTAACAACGGCATCAAGACTGAACTGGGAAAGAAGAGCGGTGGGGCCCATGCTAAAGCCACCGGGGAGACATCCGGAACAGCCGCTAGTGCCGACGGCTCTGTCGGCGGAGAAGGAAACGCTAAACGTGACTCTGAGCTATCTGCTGTGGAGAGACAAGAAATTCAGATGAAGAAGGCTAAGCTAATCAGCATGCTTGATGAGGTGGATCCGAGGTACAGGCAGTACCACCAGCAGATGCAGATAGTTATTTCTTCATTCGAACAAGCTGCGGGAATTGGGGCAGCCAGAACATACACAGCCCTTGCGCTTCAAACAATCTCCAAGAAATTTAGGTGCTTGAAAGATGCAATATCAGACCAAATTCGAGCAGCAAACAAAAGCTTAGGAGAAGAAGATAGCTTTGGAAGCAAGATGGAAGGTTCGAGGCTCAAGTACGTAGACCATCACCTTCGCCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCACCACAATGCCTGGAGACCCCAGAGAGGGTTGCCCGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCTGACAAGCACATGCTTGCTAAGCAAACAGGCCTCACTAGGAGCCAGGTTTCGAATTGGTTTATAAATGCTCGAGTTCGGCTCTGGAAACCAATGGTGGAAGAAATGTACATGGAGGAGATGAAGGAACAAGGACAGAATGGATCTGAAGATAAATCAAGTAGGAGCGGTGAAGATCCTGCAATTAAAACCGCAGCTCCACGACAGAAAAAAGGCCCTGCCACTGAAACGGACGCCAGAAGCCTCAACTGCAACCAAGACTCACCTTCAAACCACAACACTCCTACAGTTTCAGTTTCTAAACCATTAATATCATCACCCACTGGGGATAGTGTCAGAAACCAGTTTGGATTCAGTTTCATGGGATCATTAGATCTACAAGGGATCACGCAAGGAAGTCCCAAGAAACCAAGAAACCATGAAATTCTACACTTCCCAACCATGGACGTGAAGCCCAATGAGGCCAATAACGAGCAACTTACAATAAAATTTGGAGAGGAGAGGCAGGGGAGGGATGAATACTCATTCATGGGAACCCAAGCAAACTTCATTGGAGGTTTTGGACAATACCCAATTGGAGAAATTGGAAGGTTTGAGGCAGAGCAGTTTGCTCCAAGGTTTTCAGGTAATAATGGGGTTTCCCTGACTCTTGGTCTTCCCCACTGTGACACGTTGTCAGGAAGCCATCAAACTTTTCTCCCAAACCAGAACATTCAGTTGGGAAGAAGACTGGAGTTGGGTGACTCAAACGAGTATGGAGCCATAAACCCTTCCACTACTCACTCATCAGCTGCATTTGAGAACATGAACATGCAGAACCCAAAGAGGTTTGCTGCTCAGTTGTTACCAGACTTTGTCACCTAA 2091 0.5074 MATYFHGNPEIQPPDGLQTLVLMNPSYIHYPDTPPPHPSNFVFLNSIAAGNNSVTPQNLHHVPPNHTQQFVGIPLPTVAATSSSQDPGQQHSVHPHQDGSTLHGFVPRMQCNLWNQIDPNATARETPRTQQQGLSLSLSSQQAGMGSFRADRDVASQGQAPAMSGEDFPGSGGSPSSVSGVTNVNGVSGIQSVLLSSKYLKAAQELLDEAVNVNNGIKTELGKKSGGAHAKATGETSGTAASADGSVGGEGNAKRDSELSAVERQEIQMKKAKLISMLDEVDPRYRQYHQQMQIVISSFEQAAGIGAARTYTALALQTISKKFRCLKDAISDQIRAANKSLGEEDSFGSKMEGSRLKYVDHHLRQQRALQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQGQNGSEDKSSRSGEDPAIKTAAPRQKKGPATETDARSLNCNQDSPSNHNTPTVSVSKPLISSPTGDSVRNQFGFSFMGSLDLQGITQGSPKKPRNHEILHFPTMDVKPNEANNEQLTIKFGEERQGRDEYSFMGTQANFIGGFGQYPIGEIGRFEAEQFAPRFSGNNGVSLTLGLPHCDTLSGSHQTFLPNQNIQLGRRLELGDSNEYGAINPSTTHSSAAFENMNMQNPKRFAAQLLPDFVT 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02092 696 SMART HOX_1 380 444 IPR001356 GO:0003677
Accr5g02092 696 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Accr5g02092 696 MobiDBLite consensus disorder prediction 78 104 - -
Accr5g02092 696 MobiDBLite consensus disorder prediction 220 260 - -
Accr5g02092 696 CDD homeodomain 380 440 IPR001356 GO:0003677
Accr5g02092 696 MobiDBLite consensus disorder prediction 450 517 - -
Accr5g02092 696 MobiDBLite consensus disorder prediction 78 97 - -
Accr5g02092 696 MobiDBLite consensus disorder prediction 485 517 - -
Accr5g02092 696 FunFam BEL1-like homeodomain protein 9 383 445 - -
Accr5g02092 696 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 95 462 - -
Accr5g02092 696 MobiDBLite consensus disorder prediction 450 467 - -
Accr5g02092 696 Coils Coil 200 220 - -
Accr5g02092 696 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Accr5g02092 696 MobiDBLite consensus disorder prediction 124 146 - -
Accr5g02092 696 SUPERFAMILY Homeodomain-like 381 447 IPR009057 -
Accr5g02092 696 Gene3D - 383 461 - -
Accr5g02092 696 SMART prehox3 188 332 IPR006563 -
Accr5g02092 696 Pfam Associated with HOX 193 331 IPR006563 -
Accr5g02092 696 MobiDBLite consensus disorder prediction 124 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02092 Accr-Chr5 47231223 47233740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02092 1 695 Homeobox Transcription Factor Family AT2G35940 49.934 3.44e-178 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Accr5g02092 POX 7.5e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02092 - - pcin:129306285 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02447 2 59890248 59892599 Accr5g02092 5 47231223 47233740 CCT
Accr5g02092 5 47231223 47233740 Accr5g02092 5 47231223 47233740 ECH