Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02091 ATGGATCACGAGATTGATGTCCCTCCCTTCTTCATCTGCCCCGTCTCATTAGAAATCATGAAGGACCCCGTCACTGTCTCCACCGGTATTACCTACGACCGTGAGAGCATCGAGAAATGGCTCTTCTCCACCAACAACTTCACCTGCCCCGTTACCAAACAGCCCCTATCAGATAACACCGATCTCACCCCCAACCACACCCTTCGCCGGCTGATTCAGGCCTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGAATCCCCACCCCTAAGCCTCCAATCACCAAAACCCAAATTGCCAAGCTCATCAGAGACGCTTCCCGATCACCTCACTCCCTCACTTCATGTCTTCGGCAACTTAAATCCATTGCTTCCGACAGTGAAACAAACCGACGCTGCATGGAAGCTTCCGGTGCCTTTGAGTTCTTAGCATCTATAATCATGTCCACAGCCTCACCTCCCCAAGTGGATCCCAACCAAGACGAAGCCTTAAGCATCCTCCACACCCTCCACGTGTCCGAAGCTACCCTAAAATCTCTCATCGCCTTCAGAAACGGAGACCTCATAGATTCGTTAATCACAGTCTTGCAGCAAGGAGGGTACGAGTCACGAGCCTACGCAGTTCTTTTACTCAATTCAATGTTCCAAGTTGCTGATTCTACACGCTTGTTCAACATAAGATATGAATTATTTGTTGAATTAGTACAAATCCTCAAAGATCAAATCTCCCAGCAGGCTACAAATGCGACGCTGCAAACACTGATCCAACTTTGCCCATGGGGAAGAAACAGGTACAGAGCGGTAAAAGTAGGGTGTGTGTGGGCAATAATAGAACTGCTTCTGGATTGTGAGGAGAGGAAGCTGTGTGAGATGATGCTGGTGGTGTTGGATATGCTCTGTGGGTGTGCCGAGGGAAGGGCGGAGCTGTTGAGGCACGGGGCGGGGATCGCCGTCGTGTCCAAGAAGCTTCTGAGGGTTTCCATGATGTCTAACGAGAGGGCGGTGAGGATTCTGCTGTCAGTTTCCAAGTACTCGGCGACACCAAGTGTGGTGCAGGAAATGATACAGGTGGGTGTGATGGGGAAGCTGTGTTTGGTGATGCAAACGGAGAGTGGAAGCAAGACGAAGGAGAAGGCTAGAGAGATTCTCAAACTGCATGCTCACGCTTGCCACAACTCTCCATGCATGCCCAGCACTCTGGGTTCCTACTTAGCTTGA 1218 0.5057 MDHEIDVPPFFICPVSLEIMKDPVTVSTGITYDRESIEKWLFSTNNFTCPVTKQPLSDNTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPITKTQIAKLIRDASRSPHSLTSCLRQLKSIASDSETNRRCMEASGAFEFLASIIMSTASPPQVDPNQDEALSILHTLHVSEATLKSLIAFRNGDLIDSLITVLQQGGYESRAYAVLLLNSMFQVADSTRLFNIRYELFVELVQILKDQISQQATNATLQTLIQLCPWGRNRYRAVKVGCVWAIIELLLDCEERKLCEMMLVVLDMLCGCAEGRAELLRHGAGIAVVSKKLLRVSMMSNERAVRILLSVSKYSATPSVVQEMIQVGVMGKLCLVMQTESGSKTKEKAREILKLHAHACHNSPCMPSTLGSYLA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02091 405 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Accr5g02091 405 SUPERFAMILY RING/U-box 4 83 - -
Accr5g02091 405 PANTHER WDSAM1 PROTEIN 3 397 IPR045185 GO:0061630
Accr5g02091 405 CDD RING-Ubox_PUB 8 60 IPR045210 -
Accr5g02091 405 Gene3D - 93 400 IPR011989 -
Accr5g02091 405 SUPERFAMILY ARM repeat 104 391 IPR016024 -
Accr5g02091 405 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Accr5g02091 405 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Accr5g02091 405 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Accr5g02091 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02091 Accr-Chr5 47215942 47217159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02091 1 400 U-box Gene Family AT2G35930 55.446 1.49e-163 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02091 - - gmx:100809123 541.962