Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02087 ATGAATGACTTGTTCTCCGGCTCCTTCTCTCGCCTCCGCCACGAGCAGGCATCGCCGGACCATCATGTCATCGAAATGGCGTCTACGACGCCCACTGGCGGTGTCAACCTCGACAAATTCTTCGACAACGTGGAGTCGATCAAGGACGAACTTAAGGAGCTGGATCGCCTTAACCAGAACCTCCAGAGCTCACACGAGCAGAGCAAGACCCTTCACAACGCAAAGGCCGTCAAGGACCTCCGCGCTCGCATGGACGCCGATGTTGCGCTTGCTCTCAAGAAAGCCAAGCTCATCAAGGTCAAGCTGGAGGCTCTGGAGCGATCTAACGCGGCCAACCGTAGCTTGCCGGGCTGCGGGCCGGGATCCTCGTCTGACCGGACCCGCACTTCTGTGGTCAACGGGTTGAAAAAGAAGCTGAAGGACTCCATGGAGAGCTTCAATAACCTCAGGCAGCAGATCTCATCGGAATACCGCGAGACTGTGCAACGCAGGTATTTCACGGTCACCGGCGAGAACCCCGATGAGAAGACCGTCGACCTCTTGATCTCTACAGGTGAGAGTGAGACATTCCTTCAGAAAGCCATCCAAGAGCAGGGTAGAGGCAGGATTCTGGACACCATAAGTGAAATTCAAGAGAGGCATGATGCTGTGAAAGAGATAGAGAAGAACCTGAAGGAGTTGCATCAAGTGTTCCTTGACATGGCAGTGCTGGTGGAATCTCAAGGAGAGCAATTGGATGACATAGAGAGCCACGTGGCGAGAGCTCAATCTTTTGTGCGGGGTGGAGCCGAGCAGTTGCAGACTGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATGCTATCATGATTCTCCTTGTAATCATCTTGTTTGTGGTTCTCTTCACTGTTAGACCATGGCAACATAATGGTGGGGGTGGGGGTGGGGGTGGGGGTGGCGGCAATCAGCCAGCTTCACCTCAAACACCTCCTCCGCCTCCGCCTCCGCCTCCGCCTGCTGTAAGATAG 1014 0.5444 MNDLFSGSFSRLRHEQASPDHHVIEMASTTPTGGVNLDKFFDNVESIKDELKELDRLNQNLQSSHEQSKTLHNAKAVKDLRARMDADVALALKKAKLIKVKLEALERSNAANRSLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTVDLLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKEIEKNLKELHQVFLDMAVLVESQGEQLDDIESHVARAQSFVRGGAEQLQTARKHQKNTRKWTCYAIMILLVIILFVVLFTVRPWQHNGGGGGGGGGGGNQPASPQTPPPPPPPPPPAVR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02087 337 Coils Coil 37 67 - -
Accr5g02087 337 SUPERFAMILY t-snare proteins 35 262 IPR010989 GO:0016020|GO:0016192
Accr5g02087 337 Gene3D - 204 300 - -
Accr5g02087 337 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Accr5g02087 337 MobiDBLite consensus disorder prediction 320 337 - -
Accr5g02087 337 SMART tSNARE_6 202 269 IPR000727 -
Accr5g02087 337 CDD SNARE_syntaxin1-like 206 268 - -
Accr5g02087 337 SMART SynN_4 32 158 IPR006011 GO:0016020
Accr5g02087 337 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Accr5g02087 337 CDD SynN 37 194 IPR006011 GO:0016020
Accr5g02087 337 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 34 164 - -
Accr5g02087 337 PANTHER SYNTAXIN 54 291 IPR045242 -
Accr5g02087 337 Gene3D - 35 167 - -
Accr5g02087 337 MobiDBLite consensus disorder prediction 306 337 - -
Accr5g02087 337 Pfam SNARE domain 243 295 IPR000727 -
Accr5g02087 337 FunFam Syntaxin 132 200 300 - -
Accr5g02087 337 Coils Coil 132 156 - -
Accr5g02087 337 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02087 Accr-Chr5 47157078 47158598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02087 32 331 SNARE and Associated Proteins AT3G11820 78.738 2.56e-158 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02087 K08486 - rcu:8259763 511.146