Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02086 ATGAACGACTTGTTCAGCTCCTCCTTCTTCCGCTCCGACGAAGACAACAACCACCACCATGTCATCCAGATGACGGAGCTGACGGGCGGCGACAACCTCGACAAGTTCTTCCAGGAAGTGGATTCCCTCAAGAAAGAGCTCAACGAGGTGGAGCGCCTCAACCAATCCCTCCGAAACTCCCATGAACAGAGCAAGACTCTTCACAACGCTAAGGCCGTCAAGGACCTTCGCTCTCGCATGGACTCCGAAGTCGCCCTCGCCCTCAAGAAAGCCAAGCTCATCAAGCTCCGCCTTGAGGCCCTCGACCGCTCCAACCAAGATAACCGCAGCCTGCCCGGCTGCGGACCCGGCTCGTCTTCCGACCGGACTCGAACCTCCGTGGTCAACGGCTTGAGAAAGAAGCTCAAAGACTCCATGGACAGCTTCAACACCCTCAGGCAACAAATTTCCACCGAGTACAGAGACACCGTAAAACGTAGGTACTACACGGTCACCGGCGAGAACCCCGACGACAAAACCATCGACCTCCTTGTCTCTACTGGGGAGAGTGAAAATTTTCTGCAGAAGGCGATTCAGCAGCAAGGAAGAGCGAGCGTGATGGACACGATCCAAGAGATTCAGGAGAGGCATGACGCGGTGAAAGAGATAGAGAGGAATCTGAATGAGCTGCACCAGGTGTTCTTGGACATGGCAGTGCTGGTCCAAACTCAGGGGGAGCAGCTGGATGATATAGAGAGCCACGTGGCAAGAGCAAATTCGTACGTGAGGGGTGGGGTGCAGCAGTTGCATGTTGCGAGGAAGCACCAGAAGAATACCCGCAAATGGACTTGCATTGCGATCATACTGCTCCTCATTATTATATTGGTTATAGTTCTGCCTATTGTGTTAAGAAAGTGA 897 0.5351 MNDLFSSSFFRSDEDNNHHHVIQMTELTGGDNLDKFFQEVDSLKKELNEVERLNQSLRNSHEQSKTLHNAKAVKDLRSRMDSEVALALKKAKLIKLRLEALDRSNQDNRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMDSFNTLRQQISTEYRDTVKRRYYTVTGENPDDKTIDLLVSTGESENFLQKAIQQQGRASVMDTIQEIQERHDAVKEIERNLNELHQVFLDMAVLVQTQGEQLDDIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAIILLLIIILVIVLPIVLRK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02086 298 Coils Coil 33 63 - -
Accr5g02086 298 MobiDBLite consensus disorder prediction 105 126 - -
Accr5g02086 298 PANTHER SYNTAXIN 50 286 IPR045242 -
Accr5g02086 298 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Accr5g02086 298 FunFam Syntaxin 132 196 296 - -
Accr5g02086 298 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Accr5g02086 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Accr5g02086 298 Gene3D - 191 296 - -
Accr5g02086 298 SMART tSNARE_6 198 265 IPR000727 -
Accr5g02086 298 Coils Coil 203 223 - -
Accr5g02086 298 SMART SynN_4 28 154 IPR006011 GO:0016020
Accr5g02086 298 CDD SynN 33 190 IPR006011 GO:0016020
Accr5g02086 298 CDD SNARE_syntaxin1-like 202 262 - -
Accr5g02086 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Accr5g02086 298 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Accr5g02086 298 Gene3D - 30 163 - -
Accr5g02086 298 Pfam SNARE domain 239 291 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02086 Accr-Chr5 47151286 47152629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02086 28 277 SNARE and Associated Proteins AT3G11820 75.600 3.30e-143 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02086 K08486 - qsa:O6P43_006031 442.58