Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02085 ATGGCCATGCAAGCTGTTTACTTCAAAGAACATGAAGGAATTGCCCACGACACCATTGGGCAACTGTCATCTGTAGCCGCCTCAGCCCCCTGGTGGACTGCCCTTGGATCTCAAACAGTTCGACAGGAGTCTTTGGGCCAAATGAAACCCTTTTCACTGGACTTTCCCAACTATGTCGACCATCTCACTGGCCCCAAGCAGCCTGTGGATAAAGGACACACCACACCGTTCACTATCTTCCCAGATTGTGAGATGTCAGATGATACACAAAAGCATCAGGCAGTCATGTCACTTCTTTCGTCATCTCCTGAACCTCGTGGTCATTTTGAGATAAAATTTAATCAGCCTATGATCTGTTCAAAATATCCTTTTATGGATCGATTTTATGGGCTCATCTCAACCTATGGACCTCAGGTTCCGGGCCGTTTAATGCTGCCACTTAACTTGACATCCGATGATGGGCCAATTTATGTAAATGCTAAGCAGTACCATGGGATCATCAGGCGTCGCCAGTCACGTGCAAAGGCTTTACTTCAGAATAAATTTACAAAACGCCGCAGGCCCTATATGCATGAATCACGTCACCTCCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACTAGAAATCTGAAGAATGGCAATGGAAATGGTGAAAGCGGAAGCACAGTGATAAAAAATGGGGAGGGCCTATTCCAGTCTAGTGGTTCTCAGAGCTCTGAAGTTCTGCAATCAGAGGGTGCAACTCTCAATTCATCAAAGGAAGCCAATGGCAACAGTTCAAATGTTTCGGGTTTAGAGGTGACAAGCATGTATGCACGTGGCACTTTCGATGGCTTAATTGGTCTCAATCATGTGGGGTCCTCTGTGCACTCTCTTGCAGACATGATAGAGAGTGGACATGGCATTGTTATGCCTGCAAAATGGGTTGCAGCAGCAGGTAACTGCTGCAAACTCTAA 972 0.466 MAMQAVYFKEHEGIAHDTIGQLSSVAASAPWWTALGSQTVRQESLGQMKPFSLDFPNYVDHLTGPKQPVDKGHTTPFTIFPDCEMSDDTQKHQAVMSLLSSSPEPRGHFEIKFNQPMICSKYPFMDRFYGLISTYGPQVPGRLMLPLNLTSDDGPIYVNAKQYHGIIRRRQSRAKALLQNKFTKRRRPYMHESRHLHAMRRPRGCGGRFLNTRNLKNGNGNGESGSTVIKNGEGLFQSSGSQSSEVLQSEGATLNSSKEANGNSSNVSGLEVTSMYARGTFDGLIGLNHVGSSVHSLADMIESGHGIVMPAKWVAAAGNCCKL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02085 323 MobiDBLite consensus disorder prediction 200 267 - -
Accr5g02085 323 Gene3D - 153 213 - -
Accr5g02085 323 MobiDBLite consensus disorder prediction 212 267 - -
Accr5g02085 323 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 155 209 IPR001289 GO:0003700|GO:0006355
Accr5g02085 323 SMART cbf3 151 212 IPR001289 GO:0003700|GO:0006355
Accr5g02085 323 ProSiteProfiles NF-YA/HAP2 family profile. 152 212 IPR001289 GO:0003700|GO:0006355
Accr5g02085 323 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 76 273 IPR001289 GO:0003700|GO:0006355
Accr5g02085 323 PRINTS CCAAT-binding transcription factor subunit B signature 155 177 IPR001289 GO:0003700|GO:0006355
Accr5g02085 323 PRINTS CCAAT-binding transcription factor subunit B signature 186 209 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02085 Accr-Chr5 47146787 47150097 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02085 14 323 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.073 2.32e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Accr5g02085 CBFB_NFYA 2.7e-24 No_clan