Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02084 ATGGCCATGCAAGCTGTTTACTTCAAAGAACATGAAGGAATTGCCCACGACACCATTGGGCAACTGTCATCTGTAGCCGCCTCAGCCCCCTGGTGGACTGCCCTTGGATCTCAAACAGTTCGACAGGAGTCTTTGGGCCAAATGAAACCCTTTTCACTGGACTTTCCCAACTATGTCGACCATCTCACTGGCCCCAAGCAGCCTGTGGATAAAGGACACACCACACCGTTCACTATCTTCCCAGAAGATTGTGAGATGTCAGATGATACACAAAAGCATCAGGCAGTCATGTCACTTCTTTCGTCATCTCCTGAACCTCGTGGTCATTTTGAGATAAAATTTAATCAGCCTATGATCTGTTCAAAATATCCTTTTATGGATCGATTTTATGGGCTCATCTCAACCTATGGACCTCAGGTTCCGGGCCGTTTAATGCTGCCACTTAACTTGACATCCGATGATGGGCCAATTTATGTAAATGCTAAGCAGTACCATGGGATCATCAGGCGTCGCCAGTCACGTGCAAAGGCTTTACTTCAGAATAAATTTACAAAACGCCGCAGGCCCTATATGCATGAATCACGTCACCTCCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACTAGAAATCTGAAGAATGGCAATGGAAATGGTGAAAGCGGAAGCACAGTGATAAAAAATGGGGAGGGCCTATTCCAGTCTAGTGGTTCTCAGAGCTCTGAAGTTCTGCAATCAGAGGGTGCAACTCTCAATTCATCAAAGGAAGCCAATGGCAACAGTTCAAATGTTTCGGGTTTAGAGGTGACAAGCATGTATGCACGTGGCACTTTCGATGGCTTAATTGGTCTCAATCATGTGGGGTCCTCTGTGCACTCTCTTGCAGACATGATAGAGAGTGGACATGGCATTGTTATGCCTGCAAAATGGGTTGCAGCAGCAGGTAACTGCTGCAAACTCTAA 975 0.4656 MAMQAVYFKEHEGIAHDTIGQLSSVAASAPWWTALGSQTVRQESLGQMKPFSLDFPNYVDHLTGPKQPVDKGHTTPFTIFPEDCEMSDDTQKHQAVMSLLSSSPEPRGHFEIKFNQPMICSKYPFMDRFYGLISTYGPQVPGRLMLPLNLTSDDGPIYVNAKQYHGIIRRRQSRAKALLQNKFTKRRRPYMHESRHLHAMRRPRGCGGRFLNTRNLKNGNGNGESGSTVIKNGEGLFQSSGSQSSEVLQSEGATLNSSKEANGNSSNVSGLEVTSMYARGTFDGLIGLNHVGSSVHSLADMIESGHGIVMPAKWVAAAGNCCKL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02084 324 MobiDBLite consensus disorder prediction 213 268 - -
Accr5g02084 324 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 156 210 IPR001289 GO:0003700|GO:0006355
Accr5g02084 324 Gene3D - 154 214 - -
Accr5g02084 324 SMART cbf3 152 213 IPR001289 GO:0003700|GO:0006355
Accr5g02084 324 PRINTS CCAAT-binding transcription factor subunit B signature 187 210 IPR001289 GO:0003700|GO:0006355
Accr5g02084 324 PRINTS CCAAT-binding transcription factor subunit B signature 156 178 IPR001289 GO:0003700|GO:0006355
Accr5g02084 324 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 72 274 IPR001289 GO:0003700|GO:0006355
Accr5g02084 324 MobiDBLite consensus disorder prediction 201 268 - -
Accr5g02084 324 ProSiteProfiles NF-YA/HAP2 family profile. 153 213 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02084 Accr-Chr5 47146787 47150097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02084 14 324 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.025 1.15e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Accr5g02084 CBFB_NFYA 2.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02084 K08064 - gmx:100527677 426.787