Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02083 ATGAGCAATAACAGCACAGATAGTTCTCCAGGATTCCTAGGATCCAACAACATAAGTGGGTTCGGGTATGCCATAGGAATATCAAGTGGGATTCTGCTGCTCATCACCACCATCACCCTCACCTCCTATTTCTGCACCAGAAAACAGTCACCACCATCTTCGCCCTCCGCCACCTCCTCGGTTTCTCAGAGAAATCTCCCGACGTTGCTTGAGCCGCATCACACGGTGGTGGTGGATGTGGGGATGGGCGAAGCCGCCATTCTGAGCTACCCCAAGCTGCTGTATTCTGAGGCCAAGCTGCAAAAGCCAGATTCTACAGGGACATGCTGCTCCATATGCCTGGGAGATTATAAAAGCAGGGATATGCTTCGGGAGCTACCGGATTGTGGCCATATATTCCACCTCAAGTGCGTTGATCCATGGCTCAGATTGCATCCAACGTGTCCTCTCTGCAGAACATCTCCTTTCCCAACACCACTCGCAACGCCTCTGGCCGAGGTCGTTCCATTGGCCACCCGGCCCTACCTACCATAA 534 0.5281 MSNNSTDSSPGFLGSNNISGFGYAIGISSGILLLITTITLTSYFCTRKQSPPSSPSATSSVSQRNLPTLLEPHHTVVVDVGMGEAAILSYPKLLYSEAKLQKPDSTGTCCSICLGDYKSRDMLRELPDCGHIFHLKCVDPWLRLHPTCPLCRTSPFPTPLATPLAEVVPLATRPYLP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02083 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 156 IPR013083 -
Accr5g02083 177 SMART ring_2 110 151 IPR001841 -
Accr5g02083 177 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Accr5g02083 177 CDD RING-H2_EL5-like 109 152 - -
Accr5g02083 177 Pfam Ring finger domain 110 152 IPR001841 -
Accr5g02083 177 SUPERFAMILY RING/U-box 97 158 - -
Accr5g02083 177 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 166 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02083 Accr-Chr5 47137355 47137888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02083 14 176 C3H Transcription Factor Family AT5G06490 51.111 5.98e-56 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02083 - - qsa:O6P43_009684 241.891