Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02064 ATGCTTGGCTTCAAGAGCTTCTTGACCCGTACGGGAAGGATCAAGAAAATGAACAGAAACAAGCACAAACTCAAAAGCCAACTCGCTTTCCATAAGCAAAAATGCATTTCCCGTAACAATGAATTGCTAGACCGAGATGAAGTGAAGGAAGATACTGAAGGTTTCAGGCTTAAAACCTATGCTTCATCACACACCTATTGGGTTCAACCTTTGGGCAATCTTTATCTCAACACAGGTTCTATCAACTGCAGAGATACAGGTTTAGGTAATCTGCACACTCTGACAGATGAGCTTGTTCTTGAAATTCTGGGTTTGTTGAGTGGGAACGACTTGGGGGTTTTAGCGACAGTGAGCAAGTGTTTCTATGTTTTCACTAATCATGAACCCATTTGGAGGAATCTTGTGTTGGAAAATCTTAGTGGTGGTTTTCGGTACAATGGCTCTTGGAAATCTACTTATATTGGTGCTTGCTACCCTTCATATGTATCAAACATTGACGTTCTGAATTTGAAAGTGAGAGACTTTTATTCTGATTATCTTTTTCAAAGTTGGCTCTGTGCTAATCTTGAAATGAAACTAGAATGGCTGGTAAGAGATAATATAGTTCGGAAAAGAGGCATTTCGGTTGAAGAATTCGTTAAGAATTTTGAGGAGCCTAATAAACCGGTTTTGTTGGAAGGATGTCTTGATAATTGGGATGCTCTGAAGAAATGGGATAGAGATTATTTGGTGCAGTTGTGTGGTGATGTTAAGTTTTCAGTTGGTCCGGTAGAGATGAGGCTTGAAGACTATTTTCAGTATTCAGATCAAGTGAGAGAAGAAAGACCATTGTACCTGTTTGATCCAAAGTTTGCTGAAAAGGTTCCAAATTTGGATTCCCAATTTGACGTTCCGGCTTACTTCCAAGAGGACTTGTTCAGTGTCTTGGGCAAAGAGAGACCAGACTACAGTTGGATTATTGTTGGGCCAGCTGGATCAGGATCATCTTTCCATGTTGATCCAAATTCGACTTCGGCTTGGAATGCTGTAATCAAGGGCTCTAAGAAGTGGATATTATTTCCTCCCGATGTGATTCCACCTGGAGTTCATCCTACCCCTGATGGTGCGGAGGTTGCATCTCCTGTTTCAATAATTGAGTGGTTTATGAACTTTTACGGTGCGACAAAAAGCTGGAAGAGAAAACCTATTGAATGCATCTGTAAAGCTGGGGAGGTCGTCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACTTGGAGGAGTCCATAGCTATAACCCAAAATTATGTCAGCAGGAGAAACTTGCTGAATGTCTTGGATTTTCTTAAAAAGCCGAATGCGAGCGTGCTAGTTTCTGGAACAAGAGATCGAGTGAATTTGCATGATAAGTTTAGAAATGCTATAGAGGATTCTTTTCCTGGAATAATTGATGAGCTGACCCGGAAAGAGGAAGAGAAACAGATTCAGCAGAAGAAACTTTCCTTCTGGGATTCTGTCACAGATTCTAAAGTGGGAGCTTTTAAGTTCTCTTTCTAG 1536 0.4089 MLGFKSFLTRTGRIKKMNRNKHKLKSQLAFHKQKCISRNNELLDRDEVKEDTEGFRLKTYASSHTYWVQPLGNLYLNTGSINCRDTGLGNLHTLTDELVLEILGLLSGNDLGVLATVSKCFYVFTNHEPIWRNLVLENLSGGFRYNGSWKSTYIGACYPSYVSNIDVLNLKVRDFYSDYLFQSWLCANLEMKLEWLVRDNIVRKRGISVEEFVKNFEEPNKPVLLEGCLDNWDALKKWDRDYLVQLCGDVKFSVGPVEMRLEDYFQYSDQVREERPLYLFDPKFAEKVPNLDSQFDVPAYFQEDLFSVLGKERPDYSWIIVGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPTPDGAEVASPVSIIEWFMNFYGATKSWKRKPIECICKAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKKPNASVLVSGTRDRVNLHDKFRNAIEDSFPGIIDELTRKEEEKQIQQKKLSFWDSVTDSKVGAFKFSF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02064 511 SUPERFAMILY Clavaminate synthase-like 201 443 - -
Accr5g02064 511 FunFam F-box protein At1g78280 181 431 - -
Accr5g02064 511 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 88 509 - -
Accr5g02064 511 Gene3D - 86 159 - -
Accr5g02064 511 ProSiteProfiles JmjC domain profile. 286 446 IPR003347 -
Accr5g02064 511 Pfam Cupin-like domain 210 429 IPR041667 -
Accr5g02064 511 SMART cupin_9 284 446 IPR003347 -
Accr5g02064 511 Coils Coil 14 34 - -
Accr5g02064 511 SUPERFAMILY F-box domain 87 154 IPR036047 GO:0005515
Accr5g02064 511 Gene3D Cupin 162 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02064 Accr-Chr5 46990362 46992661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02064 79 435 Glycosyltransferase AT1G78280 38.251 2.18e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Accr5g02064 Cupin_8 2.1e-25 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02064 - - qsa:O6P43_009409 830.476